FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1698, 225 aa 1>>>pF1KE1698 225 - 225 aa - 225 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7783+/-0.000692; mu= 11.5445+/- 0.042 mean_var=67.5166+/-13.615, 0's: 0 Z-trim(110.2): 8 B-trim: 0 in 0/51 Lambda= 0.156088 statistics sampled from 11404 (11410) to 11404 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.35), width: 16 Scan time: 2.250 The best scores are: opt bits E(32554) CCDS33911.1 RTP2 gene_id:344892|Hs108|chr3 ( 225) 1590 366.4 8.5e-102 CCDS3287.2 RTP1 gene_id:132112|Hs108|chr3 ( 263) 1278 296.1 1.4e-80 CCDS2740.1 RTP3 gene_id:83597|Hs108|chr3 ( 232) 381 94.1 7.9e-20 CCDS33910.1 RTP4 gene_id:64108|Hs108|chr3 ( 246) 319 80.2 1.3e-15 CCDS42843.1 RTP5 gene_id:285093|Hs108|chr2 ( 572) 252 65.2 9.9e-11 >>CCDS33911.1 RTP2 gene_id:344892|Hs108|chr3 (225 aa) initn: 1590 init1: 1590 opt: 1590 Z-score: 1941.1 bits: 366.4 E(32554): 8.5e-102 Smith-Waterman score: 1590; 99.6% identity (100.0% similar) in 225 aa overlap (1-225:1-225) 10 20 30 40 50 60 pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: CCDS33 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKPSEKLLEEEVTTYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAEFCEACQEGIVHWKPSEKLLEEEVTTYT 130 140 150 160 170 180 190 200 210 220 pF1KE1 SEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF ::::::::::::::::::::::::::::::::::::::::::::: CCDS33 SEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF 190 200 210 220 >>CCDS3287.2 RTP1 gene_id:132112|Hs108|chr3 (263 aa) initn: 1267 init1: 1118 opt: 1278 Z-score: 1560.3 bits: 296.1 E(32554): 1.4e-80 Smith-Waterman score: 1278; 81.8% identity (90.2% similar) in 225 aa overlap (1-221:37-261) 10 20 30 pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELI :: :.:: ::::::::::: :::::::.:: CCDS32 WRLRCPALHLPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPADSWDLI 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE1 IDPNLKPSELAPGWKQYLEQHASGRFHCSWCWHTWQSAHVVILFHMFLDRARRAGSVRMR :::::: . :.:::::::: ::::::::::::::::: .::::::::::::.:::::::: CCDS32 IDPNLKHNVLSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRAGSVRMR 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE1 VFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQCYEEDGGQYRIHVASRPDSGPH :::::::::::::::::::::::::::::::::::::::: : ::::::::::: :. : CCDS32 VFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQCYGERGGQYRIHVASRQDNRRH 130 140 150 160 170 180 160 170 180 190 200 pF1KE1 RAEFCEACQEGIVHWKPSEKLLEEEVTTYT-SEASKP---RAQAGSGYNFLSLRWCLFWA :.:::::::::::::::::::::::.:::: :.: .: . :.:::.:: :. :::::: CCDS32 RGEFCEACQEGIVHWKPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIPWCLFWA 190 200 210 220 230 240 210 220 pF1KE1 SLCLLVVYLQFSFLSPAFF .. ::..:::::: : CCDS32 TVLLLIIYLQFSFRSSV 250 260 >>CCDS2740.1 RTP3 gene_id:83597|Hs108|chr3 (232 aa) initn: 388 init1: 217 opt: 381 Z-score: 469.5 bits: 94.1 E(32554): 7.9e-20 Smith-Waterman score: 381; 37.6% identity (63.7% similar) in 157 aa overlap (10-161:8-160) 10 20 30 40 50 60 pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW ::..: : :. .:: : : : .: :. : ::: :: .: . .::.:: CCDS27 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQY-QQWTFARFQCSS 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN : ..: ::.:..:::: .. . :.:.:::: : : .: ... . .::: .. : CCDS27 CSRNWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKN 60 70 80 90 100 110 130 140 150 160 170 pF1KE1 LITSLREQCYEEDGGQYRI--HVASRPD---SGPHRAEFCEACQEGIVHWKPSEKLLEEE :. . ..::. :.... .: : ::: .. :::: .: CCDS27 LVFRILKKCYR---GRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPS 120 130 140 150 160 170 180 190 200 210 220 pF1KE1 VTTYTSEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF CCDS27 QTPRVHSIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI 180 190 200 210 220 230 >>CCDS33910.1 RTP4 gene_id:64108|Hs108|chr3 (246 aa) initn: 329 init1: 154 opt: 319 Z-score: 393.6 bits: 80.2 E(32554): 1.3e-15 Smith-Waterman score: 331; 31.5% identity (54.0% similar) in 235 aa overlap (10-213:8-240) 10 20 30 40 50 60 pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW :...: : .. ::: .: : .: ::. . :: ::::: .:.: : :.:: CCDS33 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQY-QQRAFGWFRCSS 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN : ..: ::.: :: : . .. :.::::.: : : .:. .. . . .. ...: CCDS33 CQRSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSN 60 70 80 90 100 110 130 140 150 160 170 pF1KE1 LITSLREQCYEEDGGQYRIH---VASRPDSGPHRAEFCEACQEGIVHW-------KPSEK :. . .. : .: . . . : : . :::: :: :::.. CCDS33 LVQHILKK-YYGNGTRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSCMTKPSKS 120 130 140 150 160 170 180 190 200 pF1KE1 LLEEEVTTYTS----------EASKPRAQA----GSGYNFLS-------LRWCLFWASLC :: . : .: .:.. :.: ::::. :. : :.: : CCDS33 LLPHLKTGNSSPGIGAVYLANQAKNQSAEAKEAKGSGYEKLGPSRDPDPLNICVFILLLV 180 190 200 210 220 230 210 220 pF1KE1 LLVVYLQFSFLSPAFF ..:: CCDS33 FIVVKCFTSE 240 >>CCDS42843.1 RTP5 gene_id:285093|Hs108|chr2 (572 aa) initn: 233 init1: 143 opt: 252 Z-score: 306.2 bits: 65.2 E(32554): 9.9e-11 Smith-Waterman score: 270; 32.3% identity (54.8% similar) in 155 aa overlap (10-162:9-151) 10 20 30 40 50 60 pF1KE1 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW : ..: : :: : : :. . .: :. : : ::: : :..:. CCDS42 MDRAGADMWASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLS-RLQCGH 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 CWHTWQSAHVVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN : ::.:::: .:::.. ::: . : :.::.. : : : . . .. . . ... CCDS42 CPGTWDSAHVHVLFHLWWDRASHRGLVKMRIWGQRCRLCPAP--GDCQVRPPGEQPFLSR 60 70 80 90 100 110 130 140 150 160 170 pF1KE1 LITSLREQCYEEDGGQYRIHVASRPDSGPHRAE--FCEACQEGIVHWKPSEKLLEEEVTT :. . ..:: . : : :..: ::::. :. CCDS42 LVLHILQDCYGDGPG---------PARHPREAYEGCCEACELGVCFLQKAPDPAWSANAT 120 130 140 150 160 180 190 200 210 220 pF1KE1 YTSEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF CCDS42 KGNFPATAWGGTGTVSRGKPLSTPGDDLGKGGVVIAIPFSLVGTSNDQVPIAEGPAPPAG 170 180 190 200 210 220 225 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 11:58:10 2016 done: Sun Nov 6 11:58:10 2016 Total Scan time: 2.250 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]