FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6549, 116 aa 1>>>pF1KE6549 116 - 116 aa - 116 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9334+/-0.000323; mu= 11.7641+/- 0.020 mean_var=55.1930+/-10.896, 0's: 0 Z-trim(116.2): 44 B-trim: 673 in 2/53 Lambda= 0.172636 statistics sampled from 27191 (27236) to 27191 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.319), width: 16 Scan time: 4.500 The best scores are: opt bits E(85289) NP_660304 (OMIM: 608977,610198) mitochondrial impo ( 116) 749 194.0 4.7e-50 NP_001177162 (OMIM: 608977,610198) mitochondrial i ( 91) 603 157.6 3.3e-39 NP_037370 (OMIM: 615339) dnaJ homolog subfamily C ( 150) 452 120.1 1.1e-27 >>NP_660304 (OMIM: 608977,610198) mitochondrial import i (116 aa) initn: 749 init1: 749 opt: 749 Z-score: 1019.7 bits: 194.0 E(85289): 4.7e-50 Smith-Waterman score: 749; 100.0% identity (100.0% similar) in 116 aa overlap (1-116:1-116) 10 20 30 40 50 60 pF1KE6 MASTVVAVGLTIAAAGFAGRYVLQAMKHMEPQVKQVFQSLPKSAFSGGYYRGGFEPKMTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_660 MASTVVAVGLTIAAAGFAGRYVLQAMKHMEPQVKQVFQSLPKSAFSGGYYRGGFEPKMTK 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 REAALILGVSPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_660 REAALILGVSPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAKK 70 80 90 100 110 >>NP_001177162 (OMIM: 608977,610198) mitochondrial impor (91 aa) initn: 603 init1: 603 opt: 603 Z-score: 824.8 bits: 157.6 E(85289): 3.3e-39 Smith-Waterman score: 603; 100.0% identity (100.0% similar) in 91 aa overlap (26-116:1-91) 10 20 30 40 50 60 pF1KE6 MASTVVAVGLTIAAAGFAGRYVLQAMKHMEPQVKQVFQSLPKSAFSGGYYRGGFEPKMTK ::::::::::::::::::::::::::::::::::: NP_001 MKHMEPQVKQVFQSLPKSAFSGGYYRGGFEPKMTK 10 20 30 70 80 90 100 110 pF1KE6 REAALILGVSPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 REAALILGVSPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAKK 40 50 60 70 80 90 >>NP_037370 (OMIM: 615339) dnaJ homolog subfamily C memb (150 aa) initn: 458 init1: 360 opt: 452 Z-score: 618.2 bits: 120.1 E(85289): 1.1e-27 Smith-Waterman score: 452; 58.3% identity (84.3% similar) in 115 aa overlap (1-115:36-149) 10 20 30 pF1KE6 MASTVVAVGLTIAAAGFAGRYVLQAMKHME .. ...:::: .:: .:::::... : .: NP_037 VIAPVGESLRYAEYLQPSAKRPDADVDQQRLVRSLIAVGLGVAALAFAGRYAFRIWKPLE 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE6 PQVKQVFQSLPKSAFSGGYYRGGFEPKMTKREAALILGVSPTANKGKIRDAHRRIMLLNH . .. ... .::. ::.:::: ::..:::.:::::::.:.:.::: ::::.:.::: NP_037 QVITETAKKISTPSFSS-YYKGGFEQKMSRREAGLILGVSPSAGKAKIRTAHRRVMILNH 70 80 90 100 110 120 100 110 pF1KE6 PDKGGSPYIAAKINEAKDLLEGQAKK ::::::::.:::::::::::: .: NP_037 PDKGGSPYVAAKINEAKDLLETTTKH 130 140 150 116 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:19:14 2016 done: Tue Nov 8 14:19:14 2016 Total Scan time: 4.500 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]