FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6549, 116 aa
  1>>>pF1KE6549 116 - 116 aa - 116 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9199+/-0.000639; mu= 11.7532+/- 0.038
 mean_var=53.0653+/-10.374, 0's: 0 Z-trim(109.5): 39  B-trim: 0 in 0/51
 Lambda= 0.176063
 statistics sampled from 10909 (10941) to 10909 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.336), width:  16
 Scan time:  1.440

The best scores are:                                      opt bits E(32554)
CCDS33895.1 DNAJC19 gene_id:131118|Hs108|chr3      ( 116)  749 197.4 1.6e-51
CCDS54684.1 DNAJC19 gene_id:131118|Hs108|chr3      (  91)  603 160.3 1.9e-40
CCDS9388.1 DNAJC15 gene_id:29103|Hs108|chr13       ( 150)  452 122.1   1e-28


>>CCDS33895.1 DNAJC19 gene_id:131118|Hs108|chr3           (116 aa)
 initn: 749 init1: 749 opt: 749  Z-score: 1038.5  bits: 197.4 E(32554): 1.6e-51
Smith-Waterman score: 749; 100.0% identity (100.0% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KE6 MASTVVAVGLTIAAAGFAGRYVLQAMKHMEPQVKQVFQSLPKSAFSGGYYRGGFEPKMTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MASTVVAVGLTIAAAGFAGRYVLQAMKHMEPQVKQVFQSLPKSAFSGGYYRGGFEPKMTK
               10        20        30        40        50        60

               70        80        90       100       110      
pF1KE6 REAALILGVSPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 REAALILGVSPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAKK
               70        80        90       100       110      

>>CCDS54684.1 DNAJC19 gene_id:131118|Hs108|chr3           (91 aa)
 initn: 603 init1: 603 opt: 603  Z-score: 839.7  bits: 160.3 E(32554): 1.9e-40
Smith-Waterman score: 603; 100.0% identity (100.0% similar) in 91 aa overlap (26-116:1-91)

               10        20        30        40        50        60
pF1KE6 MASTVVAVGLTIAAAGFAGRYVLQAMKHMEPQVKQVFQSLPKSAFSGGYYRGGFEPKMTK
                                :::::::::::::::::::::::::::::::::::
CCDS54                          MKHMEPQVKQVFQSLPKSAFSGGYYRGGFEPKMTK
                                        10        20        30     

               70        80        90       100       110      
pF1KE6 REAALILGVSPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 REAALILGVSPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAKK
          40        50        60        70        80        90 

>>CCDS9388.1 DNAJC15 gene_id:29103|Hs108|chr13            (150 aa)
 initn: 458 init1: 360 opt: 452  Z-score: 629.0  bits: 122.1 E(32554): 1e-28
Smith-Waterman score: 452; 58.3% identity (84.3% similar) in 115 aa overlap (1-115:36-149)

                                             10        20        30
pF1KE6                               MASTVVAVGLTIAAAGFAGRYVLQAMKHME
                                     .. ...:::: .:: .:::::...  : .:
CCDS93 VIAPVGESLRYAEYLQPSAKRPDADVDQQRLVRSLIAVGLGVAALAFAGRYAFRIWKPLE
          10        20        30        40        50        60     

               40        50        60        70        80        90
pF1KE6 PQVKQVFQSLPKSAFSGGYYRGGFEPKMTKREAALILGVSPTANKGKIRDAHRRIMLLNH
         . .. ...   .::. ::.:::: ::..:::.:::::::.:.:.::: ::::.:.:::
CCDS93 QVITETAKKISTPSFSS-YYKGGFEQKMSRREAGLILGVSPSAGKAKIRTAHRRVMILNH
          70        80         90       100       110       120    

              100       110      
pF1KE6 PDKGGSPYIAAKINEAKDLLEGQAKK
       ::::::::.::::::::::::  .: 
CCDS93 PDKGGSPYVAAKINEAKDLLETTTKH
          130       140       150




116 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:19:13 2016 done: Tue Nov  8 14:19:13 2016
 Total Scan time:  1.440 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]