FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9956, 684 aa 1>>>pF1KB9956 684 - 684 aa - 684 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.8865+/-0.0012; mu= -0.8370+/- 0.071 mean_var=279.0776+/-59.596, 0's: 0 Z-trim(110.0): 24 B-trim: 274 in 2/51 Lambda= 0.076774 statistics sampled from 11304 (11319) to 11304 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.348), width: 16 Scan time: 3.800 The best scores are: opt bits E(32554) CCDS33890.1 SKIL gene_id:6498|Hs108|chr3 ( 684) 4506 513.2 4.9e-145 CCDS46954.1 SKIL gene_id:6498|Hs108|chr3 ( 664) 4382 499.5 6.5e-141 CCDS46953.1 SKIL gene_id:6498|Hs108|chr3 ( 638) 2979 344.1 3.8e-94 CCDS39.1 SKI gene_id:6497|Hs108|chr1 ( 728) 1053 130.8 6.9e-30 >>CCDS33890.1 SKIL gene_id:6498|Hs108|chr3 (684 aa) initn: 4506 init1: 4506 opt: 4506 Z-score: 2717.4 bits: 513.2 E(32554): 4.9e-145 Smith-Waterman score: 4506; 99.9% identity (100.0% similar) in 684 aa overlap (1-684:1-684) 10 20 30 40 50 60 pF1KB9 MENLQTNFSLVQGSTKKLNGMGDDGSPPAKKMITDIHVNGKTINKVPTVKKEHLDDYGEA :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: CCDS33 MENLQTNFSLVQGSTKKLNGMGDDGSPPAKKMITDIHANGKTINKVPTVKKEHLDDYGEA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 PVETDGEHVKRTCTSVPETLHLNPSLKHTLAQFHLSSQSSLGGPAAFSARHSQESMSPTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 PVETDGEHVKRTCTSVPETLHLNPSLKHTLAQFHLSSQSSLGGPAAFSARHSQESMSPTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 FLPLPSPQVLPGPLLIPSDSSTELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 FLPLPSPQVLPGPLLIPSDSSTELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 QQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPRTFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 QQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPRTFP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 QNGSVLPAKSSLAQLKETGSAFEVEHECLGKCQGLFAPQFYVQPDAPCIQCLECCGMFAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 QNGSVLPAKSSLAQLKETGSAFEVEHECLGKCQGLFAPQFYVQPDAPCIQCLECCGMFAP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 QTFVMHSHRSPDKRTCHWGFESAKWHCYLHVNQKYLGTPEEKKLKIILEEMKEKFSMRSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 QTFVMHSHRSPDKRTCHWGFESAKWHCYLHVNQKYLGTPEEKKLKIILEEMKEKFSMRSG 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 KRNQSKTDAPSGMELQSWYPVIKQEGDHVSQTHSFLHPSYYLYMCDKVVAPNVSLTSAVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 KRNQSKTDAPSGMELQSWYPVIKQEGDHVSQTHSFLHPSYYLYMCDKVVAPNVSLTSAVS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 QSKELTKTEASKSISRQSEKAHSSGKLQKTVSYPDVSLEEQEKMDLKTSRELCSRLDASI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 QSKELTKTEASKSISRQSEKAHSSGKLQKTVSYPDVSLEEQEKMDLKTSRELCSRLDASI 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB9 SNNSTSKRKSESATCNLVRDINKVGIGLVAAASSPLLVKDVICEDDKGKIMEEVMRTYLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 SNNSTSKRKSESATCNLVRDINKVGIGLVAAASSPLLVKDVICEDDKGKIMEEVMRTYLK 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB9 QQEKLNLILQKKQQLQMEVKMLSSSKSMKELTEEQQNLQKELESLQNEHAQRMEEFYVEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 QQEKLNLILQKKQQLQMEVKMLSSSKSMKELTEEQQNLQKELESLQNEHAQRMEEFYVEQ 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB9 KDLEKKLEQIMKQKCTCDSNLEKDKEAEYAGQLAELRQRLDHAEADRQELQDELRQEREA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 KDLEKKLEQIMKQKCTCDSNLEKDKEAEYAGQLAELRQRLDHAEADRQELQDELRQEREA 610 620 630 640 650 660 670 680 pF1KB9 RQKLEMMIKELKLQILKSSKTAKE :::::::::::::::::::::::: CCDS33 RQKLEMMIKELKLQILKSSKTAKE 670 680 >>CCDS46954.1 SKIL gene_id:6498|Hs108|chr3 (664 aa) initn: 4382 init1: 4382 opt: 4382 Z-score: 2643.4 bits: 499.5 E(32554): 6.5e-141 Smith-Waterman score: 4382; 99.8% identity (100.0% similar) in 664 aa overlap (21-684:1-664) 10 20 30 40 50 60 pF1KB9 MENLQTNFSLVQGSTKKLNGMGDDGSPPAKKMITDIHVNGKTINKVPTVKKEHLDDYGEA :::::::::::::::::.:::::::::::::::::::::: CCDS46 MGDDGSPPAKKMITDIHANGKTINKVPTVKKEHLDDYGEA 10 20 30 40 70 80 90 100 110 120 pF1KB9 PVETDGEHVKRTCTSVPETLHLNPSLKHTLAQFHLSSQSSLGGPAAFSARHSQESMSPTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 PVETDGEHVKRTCTSVPETLHLNPSLKHTLAQFHLSSQSSLGGPAAFSARHSQESMSPTV 50 60 70 80 90 100 130 140 150 160 170 180 pF1KB9 FLPLPSPQVLPGPLLIPSDSSTELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 FLPLPSPQVLPGPLLIPSDSSTELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTL 110 120 130 140 150 160 190 200 210 220 230 240 pF1KB9 QQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPRTFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 QQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPRTFP 170 180 190 200 210 220 250 260 270 280 290 300 pF1KB9 QNGSVLPAKSSLAQLKETGSAFEVEHECLGKCQGLFAPQFYVQPDAPCIQCLECCGMFAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 QNGSVLPAKSSLAQLKETGSAFEVEHECLGKCQGLFAPQFYVQPDAPCIQCLECCGMFAP 230 240 250 260 270 280 310 320 330 340 350 360 pF1KB9 QTFVMHSHRSPDKRTCHWGFESAKWHCYLHVNQKYLGTPEEKKLKIILEEMKEKFSMRSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 QTFVMHSHRSPDKRTCHWGFESAKWHCYLHVNQKYLGTPEEKKLKIILEEMKEKFSMRSG 290 300 310 320 330 340 370 380 390 400 410 420 pF1KB9 KRNQSKTDAPSGMELQSWYPVIKQEGDHVSQTHSFLHPSYYLYMCDKVVAPNVSLTSAVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 KRNQSKTDAPSGMELQSWYPVIKQEGDHVSQTHSFLHPSYYLYMCDKVVAPNVSLTSAVS 350 360 370 380 390 400 430 440 450 460 470 480 pF1KB9 QSKELTKTEASKSISRQSEKAHSSGKLQKTVSYPDVSLEEQEKMDLKTSRELCSRLDASI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 QSKELTKTEASKSISRQSEKAHSSGKLQKTVSYPDVSLEEQEKMDLKTSRELCSRLDASI 410 420 430 440 450 460 490 500 510 520 530 540 pF1KB9 SNNSTSKRKSESATCNLVRDINKVGIGLVAAASSPLLVKDVICEDDKGKIMEEVMRTYLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 SNNSTSKRKSESATCNLVRDINKVGIGLVAAASSPLLVKDVICEDDKGKIMEEVMRTYLK 470 480 490 500 510 520 550 560 570 580 590 600 pF1KB9 QQEKLNLILQKKQQLQMEVKMLSSSKSMKELTEEQQNLQKELESLQNEHAQRMEEFYVEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 QQEKLNLILQKKQQLQMEVKMLSSSKSMKELTEEQQNLQKELESLQNEHAQRMEEFYVEQ 530 540 550 560 570 580 610 620 630 640 650 660 pF1KB9 KDLEKKLEQIMKQKCTCDSNLEKDKEAEYAGQLAELRQRLDHAEADRQELQDELRQEREA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 KDLEKKLEQIMKQKCTCDSNLEKDKEAEYAGQLAELRQRLDHAEADRQELQDELRQEREA 590 600 610 620 630 640 670 680 pF1KB9 RQKLEMMIKELKLQILKSSKTAKE :::::::::::::::::::::::: CCDS46 RQKLEMMIKELKLQILKSSKTAKE 650 660 >>CCDS46953.1 SKIL gene_id:6498|Hs108|chr3 (638 aa) initn: 2947 init1: 2947 opt: 2979 Z-score: 1803.7 bits: 344.1 E(32554): 3.8e-94 Smith-Waterman score: 4113; 93.0% identity (93.3% similar) in 684 aa overlap (1-684:1-638) 10 20 30 40 50 60 pF1KB9 MENLQTNFSLVQGSTKKLNGMGDDGSPPAKKMITDIHVNGKTINKVPTVKKEHLDDYGEA :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: CCDS46 MENLQTNFSLVQGSTKKLNGMGDDGSPPAKKMITDIHANGKTINKVPTVKKEHLDDYGEA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 PVETDGEHVKRTCTSVPETLHLNPSLKHTLAQFHLSSQSSLGGPAAFSARHSQESMSPTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 PVETDGEHVKRTCTSVPETLHLNPSLKHTLAQFHLSSQSSLGGPAAFSARHSQESMSPTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 FLPLPSPQVLPGPLLIPSDSSTELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 FLPLPSPQVLPGPLLIPSDSSTELTQTVLEGESISCFQVGGEKRLCLPQVLNSVLREFTL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 QQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPRTFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 QQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITLTDAQRLCNALLRPRTFP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 QNGSVLPAKSSLAQLKETGSAFEVEHECLGKCQGLFAPQFYVQPDAPCIQCLECCGMFAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 QNGSVLPAKSSLAQLKETGSAFEVEHECLGKCQGLFAPQFYVQPDAPCIQCLECCGMFAP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 QTFVMHSHRSPDKRTCHWGFESAKWHCYLHVNQKYLGTPEEKKLKIILEEMKEKFSMRSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 QTFVMHSHRSPDKRTCHWGFESAKWHCYLHVNQKYLGTPEEKKLKIILEEMKEKFSMRSG 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 KRNQSKTDAPSGMELQSWYPVIKQEGDHVSQTHSFLHPSYYLYMCDKVVAPNVSLTSAVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 KRNQSKTDAPSGMELQSWYPVIKQEGDHVSQTHSFLHPSYYLYMCDKVVAPNVSLTSAVS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 QSKELTKTEASKSISRQSEKAHSSGKLQKTVSYPDVSLEEQEKMDLKTSRELCSRLDASI :::::::::: .::: CCDS46 QSKELTKTEA----------------------------------------------NASI 430 490 500 510 520 530 540 pF1KB9 SNNSTSKRKSESATCNLVRDINKVGIGLVAAASSPLLVKDVICEDDKGKIMEEVMRTYLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 SNNSTSKRKSESATCNLVRDINKVGIGLVAAASSPLLVKDVICEDDKGKIMEEVMRTYLK 440 450 460 470 480 490 550 560 570 580 590 600 pF1KB9 QQEKLNLILQKKQQLQMEVKMLSSSKSMKELTEEQQNLQKELESLQNEHAQRMEEFYVEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 QQEKLNLILQKKQQLQMEVKMLSSSKSMKELTEEQQNLQKELESLQNEHAQRMEEFYVEQ 500 510 520 530 540 550 610 620 630 640 650 660 pF1KB9 KDLEKKLEQIMKQKCTCDSNLEKDKEAEYAGQLAELRQRLDHAEADRQELQDELRQEREA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 KDLEKKLEQIMKQKCTCDSNLEKDKEAEYAGQLAELRQRLDHAEADRQELQDELRQEREA 560 570 580 590 600 610 670 680 pF1KB9 RQKLEMMIKELKLQILKSSKTAKE :::::::::::::::::::::::: CCDS46 RQKLEMMIKELKLQILKSSKTAKE 620 630 >>CCDS39.1 SKI gene_id:6497|Hs108|chr1 (728 aa) initn: 1443 init1: 995 opt: 1053 Z-score: 650.1 bits: 130.8 E(32554): 6.9e-30 Smith-Waterman score: 1285; 38.1% identity (62.6% similar) in 661 aa overlap (83-637:14-671) 60 70 80 90 100 110 pF1KB9 HLDDYGEAPVETDGEHVKRTCTSVPETLHLNPSLKHTLAQFHLSSQSSLGGPAAFSARHS .:.:..:: ::::::.:::::::::::: . CCDS39 MEAAAGGRGCFQPHPGLQKTLEQFHLSSMSSLGGPAAFSARWA 10 20 30 40 120 130 140 pF1KB9 QESMS-----------------------PTVFLPL--PSPQVLPGPLLIPSDSSTELTQT ::... :.. :: : : :::::...::: ::: .: CCDS39 QEAYKKESAKEAGAAAVPAPVPAATEPPPVLHLPAIQPPPPVLPGPFFMPSDRSTERCET 50 60 70 80 90 100 150 160 170 180 190 200 pF1KB9 VLEGESISCFQVGGEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKV :::::.:::: :::::::::::.::::::.:.:::::.:::::.:::::::.:::.:::: CCDS39 VLEGETISCFVVGGEKRLCLPQILNSVLRDFSLQQINAVCDELHIYCSRCTADQLEILKV 110 120 130 140 150 160 210 220 230 240 250 260 pF1KB9 LGILPFNAPSCGLITLTDAQRLCNALLRPRTFPQNGSVLPAKSSLAQLKETGSAFEVEHE .:::::.:::::::: :::.::::::: ..: . : : :. . . .: :: CCDS39 MGILPFSAPSCGLITKTDAERLCNALLYGGAYPPPCKKELAASLALGLELSERSVRVYHE 170 180 190 200 210 220 270 280 290 300 310 320 pF1KB9 CLGKCQGLFAPQFYVQPDAPCIQCLECCGMFAPQTFVMHSHRSPDKRTCHWGFESAKWHC :.:::.::..:..: .:.: :::::.: :. :. ::.:::.. ..:::::::.::.:. CCDS39 CFGKCKGLLVPELYSSPSAACIQCLDCRLMYPPHKFVVHSHKALENRTCHWGFDSANWRA 230 240 250 260 270 280 330 340 350 360 pF1KB9 YLHVNQKYLGTPEEKKLKIILEEMKEKF-------------------SMR-------SGK :. ..: : : :. .: :...:::: :.: : . CCDS39 YILLSQDYTGKEEQARLGRCLDDVKEKFDYGNKYKRRVPRVSSEPPASIRPKTDDTSSQS 290 300 310 320 330 340 370 380 390 pF1KB9 RNQSKTDAPSGM----------------------ELQSWYPVIKQEGDHVS-QTHSFLHP :. : ::. .. : :... ..: . .... CCDS39 PAPSEKDKPSSWLRTLAGSSNKSLGCVHPRQRLSAFRPWSPAVSASEKELSPHLPALIRD 350 360 370 380 390 400 400 410 420 430 440 450 pF1KB9 SYYLYMC-DKVVAPNVSLTSAVSQSKELTKTEASKSISRQSEKAHSSGKLQK---TVSYP :.: : . .:::::.:. .:.: ... . ..:: : . . .: ::. : CCDS39 SFYSYKSFETAVAPNVALAPP-AQQKVVSSPPCAAAVSRAPEPLATCTQPRKRKLTVDTP 410 420 430 440 450 460 460 470 480 490 500 pF1KB9 D-------VSLEEQEKMDLKTSRELCSR--LDASISNNSTSKRKSESATCNL----VRDI :. :..: : .. :. :: . .:.:. :. . : :.. .: .: . CCDS39 GAPETLAPVAAPEEDK-DSEAEVEVESREEFTSSLSSLSSPSFTSSSSAKDLGSPGARAL 470 480 490 500 510 520 510 520 530 540 pF1KB9 NKVGIGLVAAASSP------------LLVKDVICEDDKGKIMEEVMRTYLKQQEKLNLIL .. .: :..: : . .. : :...::.. .::.:::. : CCDS39 PSAVPDAAAPADAPSGLEAELEHLRQALEGGLDTKEAKEKFLHEVVKMRVKQEEKLSAAL 530 540 550 560 570 580 550 560 570 580 590 600 pF1KB9 QKKQQLQMEVKMLSSSKS--MKELTEEQQNLQKELESLQNEHAQRMEEFYVEQKDLEKKL : :..:..:...: .:. ..: :: ..::.::.: :. :. ..:.: . :...: CCDS39 QAKRSLHQELEFLRVAKKEKLREATEAKRNLRKEIERLRAENEKKMKEANESRLRLKREL 590 600 610 620 630 640 610 620 630 640 650 660 pF1KB9 EQIMKQKCTCDSNLEKDK-EAEYAGQLAELRQRLDHAEADRQELQDELRQEREARQKLEM :: .: .::.. : . .:.:..:. .:. CCDS39 EQA-RQARVCDKGCEAGRLRAKYSAQIEDLQVKLQHAEADREQLRADLLREREAREHLEK 650 660 670 680 690 700 670 680 pF1KB9 MIKELKLQILKSSKTAKE CCDS39 VVKELQEQLWPRARPEAAGSEGAAELEP 710 720 684 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 11:59:28 2016 done: Sun Nov 6 11:59:29 2016 Total Scan time: 3.800 Total Display time: 0.060 Function used was FASTA [36.3.4 Apr, 2011]