Result of FASTA (omim) for
pFN21AB7912
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7912, 331 aa
1>>>pF1KB7912 331 - 331 aa - 331 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5717+/-0.000516; mu= 10.2651+/- 0.033
mean_var=377.1272+/-78.492, 0's: 0 Z-trim(119.7): 197 B-trim: 1023 in 2/54
Lambda= 0.066044
statistics sampled from 33797 (34082) to 33797 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.4), width: 16
Scan time: 7.450
The best scores are: opt bits E(85289)
NP_006875 (OMIM: 602504) short stature homeobox pr ( 331) 2199 223.3 5.8e-58
NP_001157150 (OMIM: 602504) short stature homeobox ( 319) 1614 167.5 3.4e-41
NP_003021 (OMIM: 602504) short stature homeobox pr ( 355) 1479 154.7 2.7e-37
XP_006713790 (OMIM: 602504) PREDICTED: short statu ( 343) 894 98.9 1.6e-20
XP_016862542 (OMIM: 602504) PREDICTED: short statu ( 204) 830 92.5 8.4e-19
XP_016862543 (OMIM: 602504) PREDICTED: short statu ( 204) 830 92.5 8.4e-19
XP_016862544 (OMIM: 602504) PREDICTED: short statu ( 190) 743 84.1 2.5e-16
XP_006713791 (OMIM: 602504) PREDICTED: short statu ( 190) 743 84.1 2.5e-16
NP_006874 (OMIM: 312865,400020) short stature home ( 225) 730 83.0 6.5e-16
NP_000442 (OMIM: 312865,400020) short stature home ( 292) 722 82.4 1.3e-15
NP_057391 (OMIM: 604675) paired mesoderm homeobox ( 253) 343 46.2 8.7e-05
NP_115485 (OMIM: 604529) homeobox protein orthoped ( 325) 333 45.4 0.00019
NP_068745 (OMIM: 605420,609597,613451,615529) home ( 411) 326 45.0 0.00034
NP_001263380 (OMIM: 606701) dorsal root ganglia ho ( 263) 321 44.2 0.00038
XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX ( 231) 320 44.0 0.00038
NP_008913 (OMIM: 601527,613456) ALX homeobox prote ( 326) 320 44.2 0.00045
NP_001290437 (OMIM: 612019) intestine-specific hom ( 245) 313 43.3 0.00062
XP_006711451 (OMIM: 167420,202650) PREDICTED: pair ( 198) 311 43.0 0.00064
NP_008833 (OMIM: 167420,202650) paired mesoderm ho ( 217) 311 43.1 0.00067
NP_073207 (OMIM: 167420,202650) paired mesoderm ho ( 245) 311 43.1 0.00071
NP_003915 (OMIM: 209880,603851,613013) paired meso ( 314) 312 43.4 0.00075
XP_016870292 (OMIM: 604675) PREDICTED: paired meso ( 193) 304 42.3 0.001
NP_852126 (OMIM: 122880,148820,193500,268220,60659 ( 403) 309 43.3 0.001
NP_852125 (OMIM: 122880,148820,193500,268220,60659 ( 407) 309 43.3 0.001
NP_852122 (OMIM: 122880,148820,193500,268220,60659 ( 479) 309 43.4 0.0011
NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483) 309 43.4 0.0011
NP_852123 (OMIM: 122880,148820,193500,268220,60659 ( 484) 309 43.4 0.0011
NP_852124 (OMIM: 122880,148820,193500,268220,60659 ( 505) 309 43.5 0.0012
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 303 42.6 0.0014
NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562) 306 43.3 0.0015
NP_001306003 (OMIM: 605726,610362,610381,613757) r ( 230) 297 41.8 0.0017
NP_006252 (OMIM: 262600,601538) homeobox protein p ( 226) 296 41.7 0.0018
NP_005160 (OMIM: 602078,602753) paired mesoderm ho ( 284) 297 41.9 0.0019
NP_116142 (OMIM: 605726,610362,610381,613757) reti ( 184) 293 41.2 0.002
NP_001128726 (OMIM: 167410,268220) paired box prot ( 505) 300 42.6 0.0021
NP_039236 (OMIM: 167410,268220) paired box protein ( 518) 300 42.6 0.0021
NP_002575 (OMIM: 167410,268220) paired box protein ( 520) 300 42.6 0.0021
NP_757379 (OMIM: 607410) diencephalon/mesencephalo ( 377) 289 41.4 0.0038
XP_011538970 (OMIM: 607410) PREDICTED: diencephalo ( 377) 289 41.4 0.0038
XP_016855778 (OMIM: 607410) PREDICTED: diencephalo ( 377) 289 41.4 0.0038
NP_001257453 (OMIM: 600037,610125,613986) homeobox ( 289) 285 40.8 0.0043
NP_001257452 (OMIM: 600037,610125,613986) homeobox ( 289) 285 40.8 0.0043
NP_758840 (OMIM: 600037,610125,613986) homeobox pr ( 289) 285 40.8 0.0043
NP_001257454 (OMIM: 600037,610125,613986) homeobox ( 297) 285 40.8 0.0043
NP_068374 (OMIM: 600037,610125,613986) homeobox pr ( 297) 285 40.8 0.0043
NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343) 286 41.0 0.0044
NP_036608 (OMIM: 604295) ventral anterior homeobox ( 290) 280 40.3 0.006
NP_002644 (OMIM: 119800,186550,602149) pituitary h ( 314) 276 40.0 0.0081
NP_055377 (OMIM: 600036) homeobox protein OTX1 [Ho ( 354) 275 40.0 0.0092
NP_001186699 (OMIM: 600036) homeobox protein OTX1 ( 354) 275 40.0 0.0092
>>NP_006875 (OMIM: 602504) short stature homeobox protei (331 aa)
initn: 2199 init1: 2199 opt: 2199 Z-score: 1161.6 bits: 223.3 E(85289): 5.8e-58
Smith-Waterman score: 2199; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)
10 20 30 40 50 60
pF1KB7 MEELTAFVSKSFDQKVKEKKEAITYREVLESGPLRGAKEPTGCTEAGRDDRSSPAVRAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MEELTAFVSKSFDQKVKEKKEAITYREVLESGPLRGAKEPTGCTEAGRDDRSSPAVRAAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRELDMGAAERSREPGSPRLTEVSPEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRELDMGAAERSREPGSPRLTEVSPEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 KDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQDSHCNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQDSHCNV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 TPLSFQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TPLSFQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVV
250 260 270 280 290 300
310 320 330
pF1KB7 AAAAAAKTTSKNSSIADLRLKAKKHAAALGL
:::::::::::::::::::::::::::::::
NP_006 AAAAAAKTTSKNSSIADLRLKAKKHAAALGL
310 320 330
>>NP_001157150 (OMIM: 602504) short stature homeobox pro (319 aa)
initn: 1573 init1: 1573 opt: 1614 Z-score: 860.5 bits: 167.5 E(85289): 3.4e-41
Smith-Waterman score: 2077; 96.4% identity (96.4% similar) in 331 aa overlap (1-331:1-319)
10 20 30 40 50 60
pF1KB7 MEELTAFVSKSFDQKVKEKKEAITYREVLESGPLRGAKEPTGCTEAGRDDRSSPAVRAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEELTAFVSKSFDQKVKEKKEAITYREVLESGPLRGAKEPTGCTEAGRDDRSSPAVRAAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRELDMGAAERSREPGSPRLTEVSPEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRELDMGAAERSREPGSPRLTEVSPEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 KDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQDSHCNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQ------
190 200 210 220 230
250 260 270 280 290 300
pF1KB7 TPLSFQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ------VQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVV
240 250 260 270 280
310 320 330
pF1KB7 AAAAAAKTTSKNSSIADLRLKAKKHAAALGL
:::::::::::::::::::::::::::::::
NP_001 AAAAAAKTTSKNSSIADLRLKAKKHAAALGL
290 300 310
>>NP_003021 (OMIM: 602504) short stature homeobox protei (355 aa)
initn: 1426 init1: 1426 opt: 1479 Z-score: 790.6 bits: 154.7 E(85289): 2.7e-37
Smith-Waterman score: 2141; 93.2% identity (93.2% similar) in 355 aa overlap (1-331:1-355)
10 20 30 40 50 60
pF1KB7 MEELTAFVSKSFDQKVKEKKEAITYREVLESGPLRGAKEPTGCTEAGRDDRSSPAVRAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MEELTAFVSKSFDQKVKEKKEAITYREVLESGPLRGAKEPTGCTEAGRDDRSSPAVRAAG
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 GGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRELDMGAAERSREPGSPRLTE-----
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRELDMGAAERSREPGSPRLTEGRRKP
70 80 90 100 110 120
120 130 140 150
pF1KB7 -------------------VSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELE
:::::::::::::::::::::::::::::::::::::::::
NP_003 TKAEVQATLLLPGEAFRFLVSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELE
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB7 RLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEA
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB7 CRVAPYVNVGALRMPFQQDSHCNVTPLSFQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 CRVAPYVNVGALRMPFQQDSHCNVTPLSFQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMM
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB7 FPAPPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKHAAALGL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FPAPPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKHAAALGL
310 320 330 340 350
>>XP_006713790 (OMIM: 602504) PREDICTED: short stature h (343 aa)
initn: 1311 init1: 800 opt: 894 Z-score: 489.5 bits: 98.9 E(85289): 1.6e-20
Smith-Waterman score: 2019; 89.9% identity (89.9% similar) in 355 aa overlap (1-331:1-343)
10 20 30 40 50 60
pF1KB7 MEELTAFVSKSFDQKVKEKKEAITYREVLESGPLRGAKEPTGCTEAGRDDRSSPAVRAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MEELTAFVSKSFDQKVKEKKEAITYREVLESGPLRGAKEPTGCTEAGRDDRSSPAVRAAG
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 GGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRELDMGAAERSREPGSPRLTE-----
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRELDMGAAERSREPGSPRLTEGRRKP
70 80 90 100 110 120
120 130 140 150
pF1KB7 -------------------VSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELE
:::::::::::::::::::::::::::::::::::::::::
XP_006 TKAEVQATLLLPGEAFRFLVSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELE
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB7 RLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEA
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB7 CRVAPYVNVGALRMPFQQDSHCNVTPLSFQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMM
:::::::::::::::::: ::::::::::::::::::::::::::::::
XP_006 CRVAPYVNVGALRMPFQQ------------VQAQLQLDSAVAHAHHHLHPHLAAHAPYMM
250 260 270 280
280 290 300 310 320 330
pF1KB7 FPAPPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKHAAALGL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FPAPPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKHAAALGL
290 300 310 320 330 340
>>XP_016862542 (OMIM: 602504) PREDICTED: short stature h (204 aa)
initn: 945 init1: 789 opt: 830 Z-score: 458.5 bits: 92.5 E(85289): 8.4e-19
Smith-Waterman score: 1293; 94.0% identity (94.4% similar) in 216 aa overlap (116-331:1-204)
90 100 110 120 130 140
pF1KB7 GAGGGRSPVRELDMGAAERSREPGSPRLTEVSPELKDRKEDAKGMEDEGQTKIKQRRSRT
.:::::::::::::::::::::::::::::
XP_016 MSPELKDRKEDAKGMEDEGQTKIKQRRSRT
10 20 30
150 160 170 180 190 200
pF1KB7 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKG
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB7 VLIGAASQFEACRVAPYVNVGALRMPFQQDSHCNVTPLSFQVQAQLQLDSAVAHAHHHLH
::::::::::::::::::::::::::::: :::::::::::::::::::
XP_016 VLIGAASQFEACRVAPYVNVGALRMPFQQ------------VQAQLQLDSAVAHAHHHLH
100 110 120 130
270 280 290 300 310 320
pF1KB7 PHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKH
140 150 160 170 180 190
330
pF1KB7 AAALGL
::::::
XP_016 AAALGL
200
>>XP_016862543 (OMIM: 602504) PREDICTED: short stature h (204 aa)
initn: 945 init1: 789 opt: 830 Z-score: 458.5 bits: 92.5 E(85289): 8.4e-19
Smith-Waterman score: 1293; 94.0% identity (94.4% similar) in 216 aa overlap (116-331:1-204)
90 100 110 120 130 140
pF1KB7 GAGGGRSPVRELDMGAAERSREPGSPRLTEVSPELKDRKEDAKGMEDEGQTKIKQRRSRT
.:::::::::::::::::::::::::::::
XP_016 MSPELKDRKEDAKGMEDEGQTKIKQRRSRT
10 20 30
150 160 170 180 190 200
pF1KB7 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKG
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB7 VLIGAASQFEACRVAPYVNVGALRMPFQQDSHCNVTPLSFQVQAQLQLDSAVAHAHHHLH
::::::::::::::::::::::::::::: :::::::::::::::::::
XP_016 VLIGAASQFEACRVAPYVNVGALRMPFQQ------------VQAQLQLDSAVAHAHHHLH
100 110 120 130
270 280 290 300 310 320
pF1KB7 PHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKH
140 150 160 170 180 190
330
pF1KB7 AAALGL
::::::
XP_016 AAALGL
200
>>XP_016862544 (OMIM: 602504) PREDICTED: short stature h (190 aa)
initn: 858 init1: 702 opt: 743 Z-score: 414.0 bits: 84.1 E(85289): 2.5e-16
Smith-Waterman score: 1206; 94.1% identity (94.1% similar) in 202 aa overlap (130-331:1-190)
100 110 120 130 140 150
pF1KB7 GAAERSREPGSPRLTEVSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLF
::::::::::::::::::::::::::::::
XP_016 MEDEGQTKIKQRRSRTNFTLEQLNELERLF
10 20 30
160 170 180 190 200 210
pF1KB7 DETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACRV
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB7 APYVNVGALRMPFQQDSHCNVTPLSFQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPA
::::::::::::::: :::::::::::::::::::::::::::::::::
XP_016 APYVNVGALRMPFQQ------------VQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPA
100 110 120 130
280 290 300 310 320 330
pF1KB7 PPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKHAAALGL
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKHAAALGL
140 150 160 170 180 190
>>XP_006713791 (OMIM: 602504) PREDICTED: short stature h (190 aa)
initn: 858 init1: 702 opt: 743 Z-score: 414.0 bits: 84.1 E(85289): 2.5e-16
Smith-Waterman score: 1206; 94.1% identity (94.1% similar) in 202 aa overlap (130-331:1-190)
100 110 120 130 140 150
pF1KB7 GAAERSREPGSPRLTEVSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLF
::::::::::::::::::::::::::::::
XP_006 MEDEGQTKIKQRRSRTNFTLEQLNELERLF
10 20 30
160 170 180 190 200 210
pF1KB7 DETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACRV
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB7 APYVNVGALRMPFQQDSHCNVTPLSFQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPA
::::::::::::::: :::::::::::::::::::::::::::::::::
XP_006 APYVNVGALRMPFQQ------------VQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPA
100 110 120 130
280 290 300 310 320 330
pF1KB7 PPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKHAAALGL
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKHAAALGL
140 150 160 170 180 190
>>NP_006874 (OMIM: 312865,400020) short stature homeobox (225 aa)
initn: 880 init1: 676 opt: 730 Z-score: 406.7 bits: 83.0 E(85289): 6.5e-16
Smith-Waterman score: 800; 55.5% identity (69.1% similar) in 256 aa overlap (1-242:1-219)
10 20 30 40 50
pF1KB7 MEELTAFVSKSFDQKVKE----------KKEAITYREVLESGPLRGAKEPTGCTEAGRDD
::::::::::::::: :. ::..:::::::::: :. : : .:
NP_006 MEELTAFVSKSFDQKSKDGNGGGGGGGGKKDSITYREVLESGLARS-------RELGTSD
10 20 30 40 50
60 70 80 90 100
pF1KB7 RSSPAVRAAGGGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVR----ELDMGAAERSR
: . :::. ::. ..: . :. .
NP_006 SSLQDITE-----------------------------GGGHCPVHLFKDHVD-NDKEKLK
60 70 80
110 120 130 140 150 160
pF1KB7 EPGSPRLTEVSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPD
: :. :..: : :...::.:. ...::::.::::::::::::::::::::::::::::
NP_006 EFGTARVAEGIYECKEKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPD
90 100 110 120 130 140
170 180 190 200 210 220
pF1KB7 AFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVG
:::::::::::::::::::::::::::::::::::.::::..:.:....:::::::::.:
NP_006 AFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTANHLDACRVAPYVNMG
150 160 170 180 190 200
230 240 250 260 270 280
pF1KB7 ALRMPFQQDSHCNVTPLSFQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPL
:::::::: :. :
NP_006 ALRMPFQQMEFCSCRPGWSIMA
210 220
>>NP_000442 (OMIM: 312865,400020) short stature homeobox (292 aa)
initn: 1174 init1: 676 opt: 722 Z-score: 401.5 bits: 82.4 E(85289): 1.3e-15
Smith-Waterman score: 1164; 60.3% identity (73.0% similar) in 345 aa overlap (1-331:1-292)
10 20 30 40 50
pF1KB7 MEELTAFVSKSFDQKVKE----------KKEAITYREVLESGPLRGAKEPTGCTEAGRDD
::::::::::::::: :. ::..:::::::::: :. : : .:
NP_000 MEELTAFVSKSFDQKSKDGNGGGGGGGGKKDSITYREVLESGLARS-------RELGTSD
10 20 30 40 50
60 70 80 90 100
pF1KB7 RSSPAVRAAGGGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVR----ELDMGAAERSR
: . :::. ::. ..: . :. .
NP_000 SSLQDITE-----------------------------GGGHCPVHLFKDHVD-NDKEKLK
60 70 80
110 120 130 140 150 160
pF1KB7 EPGSPRLTEVSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPD
: :. :..: : :...::.:. ...::::.::::::::::::::::::::::::::::
NP_000 EFGTARVAEGIYECKEKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPD
90 100 110 120 130 140
170 180 190 200 210 220
pF1KB7 AFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVG
:::::::::::::::::::::::::::::::::::.::::..:.:....:::::::::.:
NP_000 AFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTANHLDACRVAPYVNMG
150 160 170 180 190 200
230 240 250 260 270 280
pF1KB7 ALRMPFQQDSHCNVTPLSFQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPL
:::::::: :::::::.. ::::: ::::::::::::.::: ::::::.
NP_000 ALRMPFQQ------------VQAQLQLEG-VAHAHPHLHPHLAAHAPYLMFPPPPFGLPI
210 220 230 240 250
290 300 310 320 330
pF1KB7 ATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKHAAALGL
:.:: .:::::.:::::: :..:::::::::::::.::: ::::
NP_000 ASLA-ESASAAAVVAAAA--KSNSKNSSIADLRLKARKHAEALGL
260 270 280 290
331 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:53:16 2016 done: Sun Nov 6 05:53:18 2016
Total Scan time: 7.450 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]