FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3709, 212 aa 1>>>pF1KE3709 212 - 212 aa - 212 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1211+/-0.000341; mu= 14.2799+/- 0.021 mean_var=56.5625+/-11.208, 0's: 0 Z-trim(114.5): 20 B-trim: 53 in 1/52 Lambda= 0.170534 statistics sampled from 24291 (24311) to 24291 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.285), width: 16 Scan time: 6.110 The best scores are: opt bits E(85289) NP_001304703 (OMIM: 611757) ropporin-1A isoform a ( 212) 1345 338.7 4.1e-93 XP_011511235 (OMIM: 611757) PREDICTED: ropporin-1A ( 212) 1345 338.7 4.1e-93 XP_011511236 (OMIM: 611757) PREDICTED: ropporin-1A ( 212) 1345 338.7 4.1e-93 NP_060048 (OMIM: 611757) ropporin-1A isoform a [Ho ( 212) 1345 338.7 4.1e-93 NP_001304704 (OMIM: 611757) ropporin-1A isoform b ( 120) 761 195.0 4.4e-50 NP_114122 (OMIM: 611756) ropporin-1-like protein [ ( 230) 521 136.0 4.7e-32 NP_001188395 (OMIM: 611756) ropporin-1-like protei ( 230) 521 136.0 4.7e-32 XP_016865436 (OMIM: 611756) PREDICTED: ropporin-1- ( 220) 502 131.3 1.1e-30 XP_006714567 (OMIM: 611756) PREDICTED: ropporin-1- ( 257) 502 131.4 1.3e-30 XP_006714566 (OMIM: 611756) PREDICTED: ropporin-1- ( 257) 502 131.4 1.3e-30 XP_016865435 (OMIM: 611756) PREDICTED: ropporin-1- ( 232) 501 131.1 1.4e-30 >>NP_001304703 (OMIM: 611757) ropporin-1A isoform a [Hom (212 aa) initn: 1345 init1: 1345 opt: 1345 Z-score: 1792.7 bits: 338.7 E(85289): 4.1e-93 Smith-Waterman score: 1345; 95.8% identity (98.1% similar) in 212 aa overlap (1-212:1-212) 10 20 30 40 50 60 pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVA :::::::::::::::::::::::::::.::::::::.::::::::::::::::::::::: NP_001 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LCNWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 KFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHV :::::::::::::::::::::::::::::::: ::::::::::::::::.::::: :::: NP_001 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV 130 140 150 160 170 180 190 200 210 pF1KE3 SRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE ::::::.:::::::::.:::::::::::: :: NP_001 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE 190 200 210 >>XP_011511235 (OMIM: 611757) PREDICTED: ropporin-1A iso (212 aa) initn: 1345 init1: 1345 opt: 1345 Z-score: 1792.7 bits: 338.7 E(85289): 4.1e-93 Smith-Waterman score: 1345; 95.8% identity (98.1% similar) in 212 aa overlap (1-212:1-212) 10 20 30 40 50 60 pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVA :::::::::::::::::::::::::::.::::::::.::::::::::::::::::::::: XP_011 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LCNWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 KFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHV :::::::::::::::::::::::::::::::: ::::::::::::::::.::::: :::: XP_011 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV 130 140 150 160 170 180 190 200 210 pF1KE3 SRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE ::::::.:::::::::.:::::::::::: :: XP_011 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE 190 200 210 >>XP_011511236 (OMIM: 611757) PREDICTED: ropporin-1A iso (212 aa) initn: 1345 init1: 1345 opt: 1345 Z-score: 1792.7 bits: 338.7 E(85289): 4.1e-93 Smith-Waterman score: 1345; 95.8% identity (98.1% similar) in 212 aa overlap (1-212:1-212) 10 20 30 40 50 60 pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVA :::::::::::::::::::::::::::.::::::::.::::::::::::::::::::::: XP_011 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LCNWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 KFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHV :::::::::::::::::::::::::::::::: ::::::::::::::::.::::: :::: XP_011 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV 130 140 150 160 170 180 190 200 210 pF1KE3 SRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE ::::::.:::::::::.:::::::::::: :: XP_011 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE 190 200 210 >>NP_060048 (OMIM: 611757) ropporin-1A isoform a [Homo s (212 aa) initn: 1345 init1: 1345 opt: 1345 Z-score: 1792.7 bits: 338.7 E(85289): 4.1e-93 Smith-Waterman score: 1345; 95.8% identity (98.1% similar) in 212 aa overlap (1-212:1-212) 10 20 30 40 50 60 pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVA :::::::::::::::::::::::::::.::::::::.::::::::::::::::::::::: NP_060 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LCNWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 KFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHV :::::::::::::::::::::::::::::::: ::::::::::::::::.::::: :::: NP_060 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV 130 140 150 160 170 180 190 200 210 pF1KE3 SRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE ::::::.:::::::::.:::::::::::: :: NP_060 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE 190 200 210 >>NP_001304704 (OMIM: 611757) ropporin-1A isoform b [Hom (120 aa) initn: 761 init1: 761 opt: 761 Z-score: 1020.1 bits: 195.0 E(85289): 4.4e-50 Smith-Waterman score: 761; 95.0% identity (97.5% similar) in 120 aa overlap (93-212:1-120) 70 80 90 100 110 120 pF1KE3 NWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWLKF :::::::::::::::::::::::::::::: NP_001 MWKVVNLPTDLFNSVMNVGRFTEEIEWLKF 10 20 30 130 140 150 160 170 180 pF1KE3 LALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHVSR :::::::::::::::::::::::::::::: ::::::::::::::::.::::: :::::: NP_001 LALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHVSR 40 50 60 70 80 90 190 200 210 pF1KE3 MLNYIEQEVIGPDGLITVNDFTQNPRVWLE ::::.:::::::::.:::::::::::: :: NP_001 MLNYMEQEVIGPDGIITVNDFTQNPRVQLE 100 110 120 >>NP_114122 (OMIM: 611756) ropporin-1-like protein [Homo (230 aa) initn: 529 init1: 303 opt: 521 Z-score: 696.5 bits: 136.0 E(85289): 4.7e-32 Smith-Waterman score: 521; 39.3% identity (71.4% similar) in 206 aa overlap (10-212:15-220) 10 20 30 40 50 pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRER :::::: .::.:.:::::.:: :...:.: :: :::::. ::..: NP_114 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 SERVALCNWAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF : . . .. :: :::.::.: . .. .: : :: . :: . :...... NP_114 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDG ..:.:..::::.:: :: ... .:: .::.:. : .:: ::::.::...: :.:..:. NP_114 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS 130 140 150 160 170 180 180 190 200 210 pF1KE3 EICASHVSRMLNYIEQEVIG-PDGLITVNDFTQNPRVWLE .. .. .: ..... . .:.: ..:: : :: NP_114 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH 190 200 210 220 230 >>NP_001188395 (OMIM: 611756) ropporin-1-like protein [H (230 aa) initn: 529 init1: 303 opt: 521 Z-score: 696.5 bits: 136.0 E(85289): 4.7e-32 Smith-Waterman score: 521; 39.3% identity (71.4% similar) in 206 aa overlap (10-212:15-220) 10 20 30 40 50 pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRER :::::: .::.:.:::::.:: :...:.: :: :::::. ::..: NP_001 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 SERVALCNWAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF : . . .. :: :::.::.: . .. .: : :: . :: . :...... NP_001 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDG ..:.:..::::.:: :: ... .:: .::.:. : .:: ::::.::...: :.:..:. NP_001 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS 130 140 150 160 170 180 180 190 200 210 pF1KE3 EICASHVSRMLNYIEQEVIG-PDGLITVNDFTQNPRVWLE .. .. .: ..... . .:.: ..:: : :: NP_001 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH 190 200 210 220 230 >>XP_016865436 (OMIM: 611756) PREDICTED: ropporin-1-like (220 aa) initn: 505 init1: 303 opt: 502 Z-score: 671.6 bits: 131.3 E(85289): 1.1e-30 Smith-Waterman score: 502; 40.5% identity (73.5% similar) in 185 aa overlap (10-192:15-199) 10 20 30 40 50 pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRER :::::: .::.:.:::::.:: :...:.: :: :::::. ::..: XP_016 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 SERVALCNWAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF : . . .. :: :::.::.: . .. .: : :: . :: . :...... XP_016 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDG ..:.:..::::.:: :: ... .:: .::.:. : .:: ::::.::...: :.:..:. XP_016 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS 130 140 150 160 170 180 180 190 200 210 pF1KE3 EICASHVSRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE .. .. .: .....: XP_016 DVSPLETESYLASLKENMIRMGAQAWLRHPTSLVAISEES 190 200 210 220 >>XP_006714567 (OMIM: 611756) PREDICTED: ropporin-1-like (257 aa) initn: 505 init1: 303 opt: 502 Z-score: 670.5 bits: 131.4 E(85289): 1.3e-30 Smith-Waterman score: 502; 40.5% identity (73.5% similar) in 185 aa overlap (10-192:15-199) 10 20 30 40 50 pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRER :::::: .::.:.:::::.:: :...:.: :: :::::. ::..: XP_006 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 SERVALCNWAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF : . . .. :: :::.::.: . .. .: : :: . :: . :...... XP_006 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDG ..:.:..::::.:: :: ... .:: .::.:. : .:: ::::.::...: :.:..:. XP_006 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS 130 140 150 160 170 180 180 190 200 210 pF1KE3 EICASHVSRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE .. .. .: .....: XP_006 DVSPLETESYLASLKENMIRMGAQAWLRHPTSLGRHHLFASPRLFAASEKTIWNKRRVRP 190 200 210 220 230 240 >>XP_006714566 (OMIM: 611756) PREDICTED: ropporin-1-like (257 aa) initn: 505 init1: 303 opt: 502 Z-score: 670.5 bits: 131.4 E(85289): 1.3e-30 Smith-Waterman score: 502; 40.5% identity (73.5% similar) in 185 aa overlap (10-192:15-199) 10 20 30 40 50 pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRER :::::: .::.:.:::::.:: :...:.: :: :::::. ::..: XP_006 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 SERVALCNWAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF : . . .. :: :::.::.: . .. .: : :: . :: . :...... XP_006 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDG ..:.:..::::.:: :: ... .:: .::.:. : .:: ::::.::...: :.:..:. XP_006 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS 130 140 150 160 170 180 180 190 200 210 pF1KE3 EICASHVSRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE .. .. .: .....: XP_006 DVSPLETESYLASLKENMIRMGAQAWLRHPTSLGRHHLFASPRLFAASEKTIWNKRRVRP 190 200 210 220 230 240 212 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:36:03 2016 done: Sun Nov 6 06:36:04 2016 Total Scan time: 6.110 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]