FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3709, 212 aa 1>>>pF1KE3709 212 - 212 aa - 212 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1829+/-0.000725; mu= 13.8757+/- 0.044 mean_var=56.2674+/-11.221, 0's: 0 Z-trim(107.7): 11 B-trim: 68 in 1/49 Lambda= 0.170980 statistics sampled from 9765 (9770) to 9765 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.3), width: 16 Scan time: 2.110 The best scores are: opt bits E(32554) CCDS33841.1 ROPN1B gene_id:152015|Hs108|chr3 ( 212) 1425 359.3 1e-99 CCDS3026.1 ROPN1 gene_id:54763|Hs108|chr3 ( 212) 1345 339.5 9.1e-94 CCDS3879.1 ROPN1L gene_id:83853|Hs108|chr5 ( 230) 521 136.3 1.5e-32 >>CCDS33841.1 ROPN1B gene_id:152015|Hs108|chr3 (212 aa) initn: 1425 init1: 1425 opt: 1425 Z-score: 1903.6 bits: 359.3 E(32554): 1e-99 Smith-Waterman score: 1425; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212) 10 20 30 40 50 60 pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LCNWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 LCNWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 KFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 KFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHV 130 140 150 160 170 180 190 200 210 pF1KE3 SRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE :::::::::::::::::::::::::::::::: CCDS33 SRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE 190 200 210 >>CCDS3026.1 ROPN1 gene_id:54763|Hs108|chr3 (212 aa) initn: 1345 init1: 1345 opt: 1345 Z-score: 1796.9 bits: 339.5 E(32554): 9.1e-94 Smith-Waterman score: 1345; 95.8% identity (98.1% similar) in 212 aa overlap (1-212:1-212) 10 20 30 40 50 60 pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVA :::::::::::::::::::::::::::.::::::::.::::::::::::::::::::::: CCDS30 MAQTDKPTCIPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LCNWAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 LCNRAELTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 KFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHV :::::::::::::::::::::::::::::::: ::::::::::::::::.::::: :::: CCDS30 KFLALACSALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHV 130 140 150 160 170 180 190 200 210 pF1KE3 SRMLNYIEQEVIGPDGLITVNDFTQNPRVWLE ::::::.:::::::::.:::::::::::: :: CCDS30 SRMLNYMEQEVIGPDGIITVNDFTQNPRVQLE 190 200 210 >>CCDS3879.1 ROPN1L gene_id:83853|Hs108|chr5 (230 aa) initn: 529 init1: 303 opt: 521 Z-score: 697.9 bits: 136.3 E(32554): 1.5e-32 Smith-Waterman score: 521; 39.3% identity (71.4% similar) in 206 aa overlap (10-212:15-220) 10 20 30 40 50 pF1KE3 MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRER :::::: .::.:.:::::.:: :...:.: :: :::::. ::..: CCDS38 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 SERVALCNWAE--LTPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRF : . . .. :: :::.::.: . .. .: : :: . :: . :...... CCDS38 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 TEEIEWLKFLALACSALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDG ..:.:..::::.:: :: ... .:: .::.:. : .:: ::::.::...: :.:..:. CCDS38 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS 130 140 150 160 170 180 180 190 200 210 pF1KE3 EICASHVSRMLNYIEQEVIG-PDGLITVNDFTQNPRVWLE .. .. .: ..... . .:.: ..:: : :: CCDS38 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH 190 200 210 220 230 212 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:36:02 2016 done: Sun Nov 6 06:36:03 2016 Total Scan time: 2.110 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]