FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1782, 241 aa 1>>>pF1KE1782 241 - 241 aa - 241 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1722+/-0.000397; mu= 9.3214+/- 0.024 mean_var=74.4500+/-14.306, 0's: 0 Z-trim(112.0): 47 B-trim: 0 in 0/58 Lambda= 0.148642 statistics sampled from 20731 (20758) to 20731 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.243), width: 16 Scan time: 6.280 The best scores are: opt bits E(85289) NP_001078826 (OMIM: 607925) B- and T-lymphocyte at ( 241) 1629 358.8 4.9e-99 XP_011510749 (OMIM: 607925) PREDICTED: B- and T-ly ( 295) 946 212.3 7.3e-55 NP_861445 (OMIM: 607925) B- and T-lymphocyte atten ( 289) 944 211.9 9.7e-55 XP_016861237 (OMIM: 607925) PREDICTED: B- and T-ly ( 289) 944 211.9 9.7e-55 >>NP_001078826 (OMIM: 607925) B- and T-lymphocyte attenu (241 aa) initn: 1629 init1: 1629 opt: 1629 Z-score: 1898.9 bits: 358.8 E(85289): 4.9e-99 Smith-Waterman score: 1629; 99.6% identity (99.6% similar) in 241 aa overlap (1-241:1-241) 10 20 30 40 50 60 pF1KE1 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SNLIESHSTTLYVTGKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SNLIESHSTTLYVTGKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 DPDLCFRMQEGSEVYSNPCLEENKPGIVYASLNHSVIGLNSRLARNVKEAPTEYASICVR :::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::: NP_001 DPDLCFRMQEGSEVYSNPCLEENKPGIVYASLNHSVIGPNSRLARNVKEAPTEYASICVR 190 200 210 220 230 240 pF1KE1 S : NP_001 S >>XP_011510749 (OMIM: 607925) PREDICTED: B- and T-lympho (295 aa) initn: 1615 init1: 944 opt: 946 Z-score: 1105.9 bits: 212.3 E(85289): 7.3e-55 Smith-Waterman score: 1376; 80.1% identity (80.1% similar) in 272 aa overlap (1-218:1-272) 10 20 30 40 50 60 pF1KE1 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ 70 80 90 100 110 120 130 pF1KE1 SNLIESHSTTLYVT---------------------------------------------- :::::::::::::: XP_011 SNLIESHSTTLYVTAFTNIPDVKSASERPSKDEMASRPWLLYRLLPLGGLPLLITTCFCL 130 140 150 160 170 180 140 150 160 170 180 pF1KE1 --------GKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPDLCF :::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FCCLRRHQGKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPDLCF 190 200 210 220 230 240 190 200 210 220 230 240 pF1KE1 RMQEGSEVYSNPCLEENKPGIVYASLNHSVIGLNSRLARNVKEAPTEYASICVRS :::::::::::::::::::::::::::::::: XP_011 RMQEGSEVYSNPCLEENKPGIVYASLNHSVIGPNSRLARNVKEAPTEYASICVRS 250 260 270 280 290 >>NP_861445 (OMIM: 607925) B- and T-lymphocyte attenuato (289 aa) initn: 1615 init1: 944 opt: 944 Z-score: 1103.7 bits: 211.9 E(85289): 9.7e-55 Smith-Waterman score: 1420; 82.1% identity (82.1% similar) in 273 aa overlap (1-225:1-273) 10 20 30 40 50 60 pF1KE1 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_861 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_861 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ 70 80 90 100 110 120 130 pF1KE1 SNLIESHSTTLYVT---------------------------------------------- :::::::::::::: NP_861 SNLIESHSTTLYVTDVKSASERPSKDEMASRPWLLYSLLPLGGLPLLITTCFCLFCCLRR 130 140 150 160 170 180 140 150 160 170 180 190 pF1KE1 --GKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPDLCFRMQEGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_861 HQGKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPDLCFRMQEGS 190 200 210 220 230 240 200 210 220 230 240 pF1KE1 EVYSNPCLEENKPGIVYASLNHSVIGLNSRLARNVKEAPTEYASICVRS :::::::::::::::::::::::::: :::::: NP_861 EVYSNPCLEENKPGIVYASLNHSVIGPNSRLARNVKEAPTEYASICVRS 250 260 270 280 >>XP_016861237 (OMIM: 607925) PREDICTED: B- and T-lympho (289 aa) initn: 1615 init1: 944 opt: 944 Z-score: 1103.7 bits: 211.9 E(85289): 9.7e-55 Smith-Waterman score: 1420; 82.1% identity (82.1% similar) in 273 aa overlap (1-225:1-273) 10 20 30 40 50 60 pF1KE1 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ 70 80 90 100 110 120 130 pF1KE1 SNLIESHSTTLYVT---------------------------------------------- :::::::::::::: XP_016 SNLIESHSTTLYVTDVKSASERPSKDEMASRPWLLYRLLPLGGLPLLITTCFCLFCCLRR 130 140 150 160 170 180 140 150 160 170 180 190 pF1KE1 --GKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPDLCFRMQEGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 HQGKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPDLCFRMQEGS 190 200 210 220 230 240 200 210 220 230 240 pF1KE1 EVYSNPCLEENKPGIVYASLNHSVIGLNSRLARNVKEAPTEYASICVRS :::::::::::::::::::::::::: :::::: XP_016 EVYSNPCLEENKPGIVYASLNHSVIGPNSRLARNVKEAPTEYASICVRS 250 260 270 280 241 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 12:00:06 2016 done: Sun Nov 6 12:00:07 2016 Total Scan time: 6.280 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]