FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1782, 241 aa
  1>>>pF1KE1782 241 - 241 aa - 241 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0577+/-0.000918; mu= 10.1772+/- 0.055
 mean_var=71.3769+/-14.010, 0's: 0 Z-trim(105.1): 28  B-trim: 34 in 1/54
 Lambda= 0.151808
 statistics sampled from 8232 (8243) to 8232 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.253), width:  16
 Scan time:  1.990

The best scores are:                                      opt bits E(32554)
CCDS43130.1 BTLA gene_id:151888|Hs108|chr3         ( 241) 1629 365.9 1.3e-101
CCDS33819.1 BTLA gene_id:151888|Hs108|chr3         ( 289)  944 215.9 2.3e-56


>>CCDS43130.1 BTLA gene_id:151888|Hs108|chr3              (241 aa)
 initn: 1629 init1: 1629 opt: 1629  Z-score: 1937.5  bits: 365.9 E(32554): 1.3e-101
Smith-Waterman score: 1629; 99.6% identity (99.6% similar) in 241 aa overlap (1-241:1-241)

               10        20        30        40        50        60
pF1KE1 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SNLIESHSTTLYVTGKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SNLIESHSTTLYVTGKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 DPDLCFRMQEGSEVYSNPCLEENKPGIVYASLNHSVIGLNSRLARNVKEAPTEYASICVR
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
CCDS43 DPDLCFRMQEGSEVYSNPCLEENKPGIVYASLNHSVIGPNSRLARNVKEAPTEYASICVR
              190       200       210       220       230       240

        
pF1KE1 S
       :
CCDS43 S
        

>>CCDS33819.1 BTLA gene_id:151888|Hs108|chr3              (289 aa)
 initn: 1615 init1: 944 opt: 944  Z-score: 1125.4  bits: 215.9 E(32554): 2.3e-56
Smith-Waterman score: 1420; 82.1% identity (82.1% similar) in 273 aa overlap (1-225:1-273)

               10        20        30        40        50        60
pF1KE1 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ
               70        80        90       100       110       120

              130                                                  
pF1KE1 SNLIESHSTTLYVT----------------------------------------------
       ::::::::::::::                                              
CCDS33 SNLIESHSTTLYVTDVKSASERPSKDEMASRPWLLYRLLPLGGLPLLITTCFCLFCCLRR
              130       140       150       160       170       180

            140       150       160       170       180       190  
pF1KE1 --GKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPDLCFRMQEGS
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 HQGKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPDLCFRMQEGS
              190       200       210       220       230       240

            200       210       220       230       240 
pF1KE1 EVYSNPCLEENKPGIVYASLNHSVIGLNSRLARNVKEAPTEYASICVRS
       :::::::::::::::::::::::::: ::::::                
CCDS33 EVYSNPCLEENKPGIVYASLNHSVIGPNSRLARNVKEAPTEYASICVRS
              250       260       270       280         




241 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:00:06 2016 done: Sun Nov  6 12:00:06 2016
 Total Scan time:  1.990 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]