FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3039, 175 aa 1>>>pF1KE3039 175 - 175 aa - 175 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8939+/-0.000323; mu= 15.6878+/- 0.020 mean_var=63.1256+/-13.459, 0's: 0 Z-trim(115.8): 30 B-trim: 672 in 1/49 Lambda= 0.161425 statistics sampled from 26440 (26470) to 26440 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.31), width: 16 Scan time: 5.770 The best scores are: opt bits E(85289) NP_612419 (OMIM: 607890) CKLF-like MARVEL transmem ( 175) 1129 270.8 7.8e-73 XP_016861135 (OMIM: 607890) PREDICTED: CKLF-like M ( 179) 936 225.9 2.7e-59 XP_011531621 (OMIM: 607890) PREDICTED: CKLF-like M ( 151) 923 222.8 1.9e-58 NP_852137 (OMIM: 607890) CKLF-like MARVEL transmem ( 142) 734 178.8 3.3e-45 NP_852662 (OMIM: 607887) CKLF-like MARVEL transmem ( 208) 224 60.1 2.5e-09 XP_016878443 (OMIM: 607887) PREDICTED: CKLF-like M ( 221) 224 60.1 2.6e-09 NP_848933 (OMIM: 607887) CKLF-like MARVEL transmem ( 234) 224 60.1 2.8e-09 NP_002659 (OMIM: 300112) proteolipid protein 2 [Ho ( 152) 192 52.6 3.4e-07 XP_011521184 (OMIM: 607887) PREDICTED: CKLF-like M ( 179) 170 47.5 1.4e-05 NP_058647 (OMIM: 616074) chemokine-like factor iso ( 152) 161 45.3 5.1e-05 NP_060271 (OMIM: 607889) CKLF-like MARVEL transmem ( 183) 146 41.9 0.00067 NP_057077 (OMIM: 600340) plasmolipin [Homo sapiens ( 182) 144 41.4 0.00092 XP_016876443 (OMIM: 607888) PREDICTED: CKLF-like M ( 156) 141 40.7 0.0013 XP_016876442 (OMIM: 607888) PREDICTED: CKLF-like M ( 156) 141 40.7 0.0013 NP_612469 (OMIM: 607888) CKLF-like MARVEL transmem ( 156) 141 40.7 0.0013 NP_001035228 (OMIM: 616074) chemokine-like factor ( 113) 133 38.7 0.0037 NP_653202 (OMIM: 607886) CKLF-like MARVEL transmem ( 182) 133 38.9 0.0054 XP_006721194 (OMIM: 607886) PREDICTED: CKLF-like M ( 182) 133 38.9 0.0054 NP_853531 (OMIM: 607886) CKLF-like MARVEL transmem ( 182) 133 38.9 0.0054 NP_443725 (OMIM: 607884) CKLF-like MARVEL transmem ( 286) 134 39.2 0.0066 >>NP_612419 (OMIM: 607890) CKLF-like MARVEL transmembran (175 aa) initn: 1129 init1: 1129 opt: 1129 Z-score: 1428.6 bits: 270.8 E(85289): 7.8e-73 Smith-Waterman score: 1129; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175) 10 20 30 40 50 60 pF1KE3 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_612 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_612 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGT 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 LLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_612 LLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV 130 140 150 160 170 >>XP_016861135 (OMIM: 607890) PREDICTED: CKLF-like MARVE (179 aa) initn: 927 init1: 927 opt: 936 Z-score: 1185.5 bits: 225.9 E(85289): 2.7e-59 Smith-Waterman score: 936; 96.1% identity (98.0% similar) in 152 aa overlap (1-152:1-152) 10 20 30 40 50 60 pF1KE3 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGT 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 LLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV ::::::::::::::::::::::::. : ..: XP_016 LLLLIASIVAASKSYNQSGLVAGAVRMFWGAFRNEFLFKMLIFFLMGEEKGLVSGAFPS 130 140 150 160 170 >>XP_011531621 (OMIM: 607890) PREDICTED: CKLF-like MARVE (151 aa) initn: 923 init1: 923 opt: 923 Z-score: 1170.2 bits: 222.8 E(85289): 1.9e-58 Smith-Waterman score: 923; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144) 10 20 30 40 50 60 pF1KE3 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGT 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 LLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV :::::::::::::::::::::::: XP_011 LLLLIASIVAASKSYNQSGLVAGADNQSPLA 130 140 150 >>NP_852137 (OMIM: 607890) CKLF-like MARVEL transmembran (142 aa) initn: 732 init1: 732 opt: 734 Z-score: 932.7 bits: 178.8 E(85289): 3.3e-45 Smith-Waterman score: 862; 81.1% identity (81.1% similar) in 175 aa overlap (1-175:1-142) 10 20 30 40 50 60 pF1KE3 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_852 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGT ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_852 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLS--------- 70 80 90 100 110 130 140 150 160 170 pF1KE3 LLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV ::::::::::::::::::::::::::::::: NP_852 ------------------------IFGFMATFLCMASIWLSYKISCVTQSTDAAV 120 130 140 >>NP_852662 (OMIM: 607887) CKLF-like MARVEL transmembran (208 aa) initn: 175 init1: 85 opt: 224 Z-score: 288.4 bits: 60.1 E(85289): 2.5e-09 Smith-Waterman score: 224; 29.2% identity (62.0% similar) in 171 aa overlap (13-172:15-185) 10 20 30 40 50 pF1KE3 MSHGAGLVRTTCSSGSALGPGAGAAQPSASP------LEGL-LDLSYPRTHAALLKVA :: : .. ... ::.. : : :: : .: : . :::: NP_852 MRSGEELDGFEGEASSTSMISGASSPYQPTTEPVSQRRGLAGLRCDPDYLRGALGRLKVA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 QMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHL-FRFYRVLTCISWPL :.. ::::::... . . :: . :. ... . :. . . .. . :.: : NP_852 QVILALIAFICIETIMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQINWNL 70 80 90 100 110 120 120 130 140 150 160 pF1KE3 SELLHYLIGTLLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLS---YKISCV ..:.. ....:..::::: :. .. .. .:..::::.:: .. .:. ...: NP_852 TDLVNTGLSAFLFFIASIVLAALNHRAGAEIAAVIFGFLATAAYAVNTFLAVQKWRVSVR 130 140 150 160 170 180 170 pF1KE3 TQSTDAAV :::. NP_852 QQSTNDYIRARTESRDVDSRPEIQRLDT 190 200 >>XP_016878443 (OMIM: 607887) PREDICTED: CKLF-like MARVE (221 aa) initn: 175 init1: 85 opt: 224 Z-score: 288.1 bits: 60.1 E(85289): 2.6e-09 Smith-Waterman score: 224; 29.2% identity (62.0% similar) in 171 aa overlap (13-172:15-185) 10 20 30 40 50 pF1KE3 MSHGAGLVRTTCSSGSALGPGAGAAQPSASP------LEGL-LDLSYPRTHAALLKVA :: : .. ... ::.. : : :: : .: : . :::: XP_016 MRSGEELDGFEGEASSTSMISGASSPYQPTTEPVSQRRGLAGLRCDPDYLRGALGRLKVA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 QMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHL-FRFYRVLTCISWPL :.. ::::::... . . :: . :. ... . :. . . .. . :.: : XP_016 QVILALIAFICIETIMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQINWNL 70 80 90 100 110 120 120 130 140 150 160 pF1KE3 SELLHYLIGTLLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLS---YKISCV ..:.. ....:..::::: :. .. .. .:..::::.:: .. .:. ...: XP_016 TDLVNTGLSAFLFFIASIVLAALNHRAGAEIAAVIFGFLATAAYAVNTFLAVQKWRVSVR 130 140 150 160 170 180 170 pF1KE3 TQSTDAAV :::. XP_016 QQSTNDYIRARTESRDVDSRPEIQRLDTLNWKPNGHQQVKG 190 200 210 220 >>NP_848933 (OMIM: 607887) CKLF-like MARVEL transmembran (234 aa) initn: 175 init1: 85 opt: 224 Z-score: 287.7 bits: 60.1 E(85289): 2.8e-09 Smith-Waterman score: 224; 29.2% identity (62.0% similar) in 171 aa overlap (13-172:15-185) 10 20 30 40 50 pF1KE3 MSHGAGLVRTTCSSGSALGPGAGAAQPSASP------LEGL-LDLSYPRTHAALLKVA :: : .. ... ::.. : : :: : .: : . :::: NP_848 MRSGEELDGFEGEASSTSMISGASSPYQPTTEPVSQRRGLAGLRCDPDYLRGALGRLKVA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 QMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHL-FRFYRVLTCISWPL :.. ::::::... . . :: . :. ... . :. . . .. . :.: : NP_848 QVILALIAFICIETIMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQINWNL 70 80 90 100 110 120 120 130 140 150 160 pF1KE3 SELLHYLIGTLLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLS---YKISCV ..:.. ....:..::::: :. .. .. .:..::::.:: .. .:. ...: NP_848 TDLVNTGLSAFLFFIASIVLAALNHRAGAEIAAVIFGFLATAAYAVNTFLAVQKWRVSVR 130 140 150 160 170 180 170 pF1KE3 TQSTDAAV :::. NP_848 QQSTNDYIRARTESRDVDSRPEIQRLDTFSYSTNVTVRKKSPTNLLSLNHWQLA 190 200 210 220 230 >>NP_002659 (OMIM: 300112) proteolipid protein 2 [Homo s (152 aa) initn: 201 init1: 97 opt: 192 Z-score: 250.1 bits: 52.6 E(85289): 3.4e-07 Smith-Waterman score: 192; 28.6% identity (65.1% similar) in 126 aa overlap (39-164:18-135) 10 20 30 40 50 60 pF1KE3 RTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAFICVRSSLW .. ::. ..: :... :. .:: .: NP_002 MADSERLSAPGCWAACTNFSRTRKGILLFAEIILCLVILICFSAST- 10 20 30 40 70 80 90 100 110 120 pF1KE3 TNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGTLLLLIASI .::. : .: .:. :..:.. .. . :.:: :.... ::...: ::.:: NP_002 PGYSSLSVIE------MILAAIFFVVYMCDLHTKIPFINWPWSDFFRTLIAAILYLITSI 50 60 70 80 90 100 130 140 150 160 170 pF1KE3 VAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV :. . :.: .::: ..:..:: : . .... . NP_002 VVLVERGNHSKIVAG-VLGLIATCLFGYDAYVTFPVRQPRHTAAPTDPADGPV 110 120 130 140 150 >>XP_011521184 (OMIM: 607887) PREDICTED: CKLF-like MARVE (179 aa) initn: 121 init1: 85 opt: 170 Z-score: 221.4 bits: 47.5 E(85289): 1.4e-05 Smith-Waterman score: 170; 26.8% identity (64.2% similar) in 123 aa overlap (54-172:34-156) 30 40 50 60 70 80 pF1KE3 AAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTIC . ::::::... . . :: . : XP_011 GEELDGFEGEASSTSMISGASSPYQPTTEPILALIAFICIETIMACSPCEGLYFFEFVSC 10 20 30 40 50 60 90 100 110 120 130 140 pF1KE3 DLIMILAFYLVHL-FRFYRVLTCISWPLSELLHYLIGTLLLLIASIVAASKSYNQSGLVA . ... . :. . . .. . :.: :..:.. ....:..::::: :. .. .. .: XP_011 SAFVVTGVLLIMFSLNLHMRIPQINWNLTDLVNTGLSAFLFFIASIVLAALNHRAGAEIA 70 80 90 100 110 120 150 160 170 pF1KE3 GAIFGFMATFLCMASIWLS---YKISCVTQSTDAAV ..::::.:: .. .:. ...: :::. XP_011 AVIFGFLATAAYAVNTFLAVQKWRVSVRQQSTNDYIRARTESRDVDSRPEIQRLDT 130 140 150 160 170 >>NP_058647 (OMIM: 616074) chemokine-like factor isoform (152 aa) initn: 136 init1: 107 opt: 161 Z-score: 211.1 bits: 45.3 E(85289): 5.1e-05 Smith-Waterman score: 161; 27.0% identity (63.9% similar) in 122 aa overlap (42-163:18-130) 20 30 40 50 60 70 pF1KE3 CSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAFICVRSSLWTNY . :. .:..: :: . :: ... : NP_058 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAP--EPY 10 20 30 40 80 90 100 110 120 130 pF1KE3 SAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGTLLLLIASIVAA . . :::. .:: : :....:. :.. . ::: .... :. :...::.:..: NP_058 IVITGFEVT------VILFFILLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLAL 50 60 70 80 90 140 150 160 170 pF1KE3 SKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV . . :.:..:..... :.:. : :. NP_058 IPE-TTTLTVGGGVFALVTAVCCLADGALIYRKLLFNPSGPYQKKPVHEKKEVL 100 110 120 130 140 150 175 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 02:17:52 2016 done: Sun Nov 6 02:17:52 2016 Total Scan time: 5.770 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]