FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3039, 175 aa 1>>>pF1KE3039 175 - 175 aa - 175 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2422+/-0.000709; mu= 13.9588+/- 0.043 mean_var=67.0326+/-13.896, 0's: 0 Z-trim(109.3): 22 B-trim: 0 in 0/50 Lambda= 0.156650 statistics sampled from 10760 (10780) to 10760 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.331), width: 16 Scan time: 1.760 The best scores are: opt bits E(32554) CCDS33730.1 CMTM7 gene_id:112616|Hs108|chr3 ( 175) 1129 263.2 5.8e-71 CCDS33731.1 CMTM7 gene_id:112616|Hs108|chr3 ( 142) 734 173.9 3.7e-44 >>CCDS33730.1 CMTM7 gene_id:112616|Hs108|chr3 (175 aa) initn: 1129 init1: 1129 opt: 1129 Z-score: 1387.5 bits: 263.2 E(32554): 5.8e-71 Smith-Waterman score: 1129; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175) 10 20 30 40 50 60 pF1KE3 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGT 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 LLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 LLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV 130 140 150 160 170 >>CCDS33731.1 CMTM7 gene_id:112616|Hs108|chr3 (142 aa) initn: 732 init1: 732 opt: 734 Z-score: 906.3 bits: 173.9 E(32554): 3.7e-44 Smith-Waterman score: 862; 81.1% identity (81.1% similar) in 175 aa overlap (1-175:1-142) 10 20 30 40 50 60 pF1KE3 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGT ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLS--------- 70 80 90 100 110 130 140 150 160 170 pF1KE3 LLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV ::::::::::::::::::::::::::::::: CCDS33 ------------------------IFGFMATFLCMASIWLSYKISCVTQSTDAAV 120 130 140 175 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 02:17:51 2016 done: Sun Nov 6 02:17:51 2016 Total Scan time: 1.760 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]