FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5138, 125 aa
  1>>>pF1KE5138 125 - 125 aa - 125 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9112+/-0.000687; mu= 12.3146+/- 0.042
 mean_var=51.7875+/-10.437, 0's: 0 Z-trim(107.2): 10  B-trim: 0 in 0/50
 Lambda= 0.178222
 statistics sampled from 9456 (9459) to 9456 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.291), width:  16
 Scan time:  1.170

The best scores are:                                      opt bits E(32554)
CCDS33548.1 MRPS6 gene_id:64968|Hs108|chr21        ( 125)  806 214.5 1.3e-56


>>CCDS33548.1 MRPS6 gene_id:64968|Hs108|chr21             (125 aa)
 initn: 806 init1: 806 opt: 806  Z-score: 1129.6  bits: 214.5 E(32554): 1.3e-56
Smith-Waterman score: 806; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KE5 MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 GGYFLVDFYAPTAAVESMVEHLSRDIDVIRGNIVKHPLTQELKECEGIVPVPLAEKLYST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GGYFLVDFYAPTAAVESMVEHLSRDIDVIRGNIVKHPLTQELKECEGIVPVPLAEKLYST
               70        80        90       100       110       120

            
pF1KE5 KKRKK
       :::::
CCDS33 KKRKK
            




125 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:44:03 2016 done: Mon Nov  7 21:44:03 2016
 Total Scan time:  1.170 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]