FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2054, 625 aa 1>>>pF1KE2054 625 - 625 aa - 625 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.5514+/-0.00123; mu= -3.3447+/- 0.073 mean_var=371.6676+/-74.554, 0's: 0 Z-trim(111.1): 93 B-trim: 0 in 0/51 Lambda= 0.066527 statistics sampled from 12060 (12130) to 12060 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.373), width: 16 Scan time: 4.090 The best scores are: opt bits E(32554) CCDS46557.1 TRAF3IP1 gene_id:26146|Hs108|chr2 ( 625) 4034 401.8 1.4e-111 CCDS33415.1 TRAF3IP1 gene_id:26146|Hs108|chr2 ( 691) 2296 235.0 2.5e-61 >>CCDS46557.1 TRAF3IP1 gene_id:26146|Hs108|chr2 (625 aa) initn: 4034 init1: 4034 opt: 4034 Z-score: 2116.7 bits: 401.8 E(32554): 1.4e-111 Smith-Waterman score: 4034; 100.0% identity (100.0% similar) in 625 aa overlap (1-625:1-625) 10 20 30 40 50 60 pF1KE2 MNAAVVRRTQEALGKVIRRPPLTEKLLSKPPFRYLHDIITEVIRMTGFMKGLYTDAEMKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MNAAVVRRTQEALGKVIRRPPLTEKLLSKPPFRYLHDIITEVIRMTGFMKGLYTDAEMKS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 DNVKDKDAKISFLQKAIDVVVMVSGEPLLAKPARIVAGHEPERTNELLQIIGKCCLNKLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 DNVKDKDAKISFLQKAIDVVVMVSGEPLLAKPARIVAGHEPERTNELLQIIGKCCLNKLS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 SDDAVRRVLAGEKGEVKGRASLTSRSQELDNKNVREEESRVHKNTEDRGDAEIKERSTSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 SDDAVRRVLAGEKGEVKGRASLTSRSQELDNKNVREEESRVHKNTEDRGDAEIKERSTSR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 DRKQKEELKEDRKPREKDKDKEKAKENGGNRHREGERERAKARARPDNERQKDRGNRERD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 DRKQKEELKEDRKPREKDKDKEKAKENGGNRHREGERERAKARARPDNERQKDRGNRERD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 RDSERKKETERKSEGGKEKERLRDRDRERDRDKGKDRDRRRVKNGEHSWDLDREKNREHD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 RDSERKKETERKSEGGKEKERLRDRDRERDRDKGKDRDRRRVKNGEHSWDLDREKNREHD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 KPEKKSASSGEMSKKLSDGTFKDSKAETETEISTRASKSLTTKTSKRRSKNSVEGDSTSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 KPEKKSASSGEMSKKLSDGTFKDSKAETETEISTRASKSLTTKTSKRRSKNSVEGDSTSD 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 AEGDAGPAGQDKSEVPETPEIPNELSSNIRRIPRPGSARPAPPRVKRQDSMEALQMDRSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 AEGDAGPAGQDKSEVPETPEIPNELSSNIRRIPRPGSARPAPPRVKRQDSMEALQMDRSG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 SGKTVSNVITESHNSDNEEDDQFVVEAAPQLSEMSEIEMVTAVELEEEEKHGGLVKKILE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 SGKTVSNVITESHNSDNEEDDQFVVEAAPQLSEMSEIEMVTAVELEEEEKHGGLVKKILE 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 TKKDYEKLQQSPKPGEKERSLFESAWKKEKDIVSKEIEKLRTSIQTLCKSALPLGKIMDY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 TKKDYEKLQQSPKPGEKERSLFESAWKKEKDIVSKEIEKLRTSIQTLCKSALPLGKIMDY 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE2 IQEDVDAMQNELQMWHSENRQHAEALQQEQRITDCAVEPLKAELAELEQLIKDQQDKICA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 IQEDVDAMQNELQMWHSENRQHAEALQQEQRITDCAVEPLKAELAELEQLIKDQQDKICA 550 560 570 580 590 600 610 620 pF1KE2 VKANILKNEEKIQKMVYSINLTSRR ::::::::::::::::::::::::: CCDS46 VKANILKNEEKIQKMVYSINLTSRR 610 620 >>CCDS33415.1 TRAF3IP1 gene_id:26146|Hs108|chr2 (691 aa) initn: 2292 init1: 2292 opt: 2296 Z-score: 1214.6 bits: 235.0 E(32554): 2.5e-61 Smith-Waterman score: 3679; 90.0% identity (90.0% similar) in 657 aa overlap (1-591:1-657) 10 20 30 40 50 60 pF1KE2 MNAAVVRRTQEALGKVIRRPPLTEKLLSKPPFRYLHDIITEVIRMTGFMKGLYTDAEMKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MNAAVVRRTQEALGKVIRRPPLTEKLLSKPPFRYLHDIITEVIRMTGFMKGLYTDAEMKS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 DNVKDKDAKISFLQKAIDVVVMVSGEPLLAKPARIVAGHEPERTNELLQIIGKCCLNKLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 DNVKDKDAKISFLQKAIDVVVMVSGEPLLAKPARIVAGHEPERTNELLQIIGKCCLNKLS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 SDDAVRRVLAGEKGEVKGRASLTSRSQELDNKNVREEESRVHKNTEDRGDAEIKERSTSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 SDDAVRRVLAGEKGEVKGRASLTSRSQELDNKNVREEESRVHKNTEDRGDAEIKERSTSR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 DRKQKEELKEDRKPREKDKDKEKAKENGGNRHREGERERAKARARPDNERQKDRGNRERD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 DRKQKEELKEDRKPREKDKDKEKAKENGGNRHREGERERAKARARPDNERQKDRGNRERD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 RDSERKKETERKSEGGKEKERLRDRDRERDRDKGKDRDRRRVKNGEHSWDLDREKNREHD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 RDSERKKETERKSEGGKEKERLRDRDRERDRDKGKDRDRRRVKNGEHSWDLDREKNREHD 250 260 270 280 290 300 310 320 330 340 350 pF1KE2 KPEKKSASSGEMSKKLSDGTFKDSKAETETEISTRASKSLTTKTSKRRSKNSVEG----- ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 KPEKKSASSGEMSKKLSDGTFKDSKAETETEISTRASKSLTTKTSKRRSKNSVEGRKEDN 310 320 330 340 350 360 pF1KE2 ------------------------------------------------------------ CCDS33 ISAKSLDSIVSGINNEPNQETTTSEIGTKEANINSTSISDDNSASLRCENIQPNPTEKQK 370 380 390 400 410 420 360 370 380 390 400 410 pF1KE2 -DSTSDAEGDAGPAGQDKSEVPETPEIPNELSSNIRRIPRPGSARPAPPRVKRQDSMEAL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 GDSTSDAEGDAGPAGQDKSEVPETPEIPNELSSNIRRIPRPGSARPAPPRVKRQDSMEAL 430 440 450 460 470 480 420 430 440 450 460 470 pF1KE2 QMDRSGSGKTVSNVITESHNSDNEEDDQFVVEAAPQLSEMSEIEMVTAVELEEEEKHGGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 QMDRSGSGKTVSNVITESHNSDNEEDDQFVVEAAPQLSEMSEIEMVTAVELEEEEKHGGL 490 500 510 520 530 540 480 490 500 510 520 530 pF1KE2 VKKILETKKDYEKLQQSPKPGEKERSLFESAWKKEKDIVSKEIEKLRTSIQTLCKSALPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 VKKILETKKDYEKLQQSPKPGEKERSLFESAWKKEKDIVSKEIEKLRTSIQTLCKSALPL 550 560 570 580 590 600 540 550 560 570 580 590 pF1KE2 GKIMDYIQEDVDAMQNELQMWHSENRQHAEALQQEQRITDCAVEPLKAELAELEQLIKDQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 GKIMDYIQEDVDAMQNELQMWHSENRQHAEALQQEQRITDCAVEPLKAELAELEQLIKDQ 610 620 630 640 650 660 600 610 620 pF1KE2 QDKICAVKANILKNEEKIQKMVYSINLTSRR CCDS33 QDKICAVKANILKNEEKIQKMVYSINLTSRR 670 680 690 625 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 12:04:30 2016 done: Sun Nov 6 12:04:31 2016 Total Scan time: 4.090 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]