FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6751, 593 aa 1>>>pF1KE6751 593 - 593 aa - 593 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5731+/-0.000832; mu= 17.3106+/- 0.050 mean_var=67.3275+/-13.406, 0's: 0 Z-trim(107.2): 28 B-trim: 11 in 1/49 Lambda= 0.156307 statistics sampled from 9427 (9444) to 9427 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.29), width: 16 Scan time: 3.380 The best scores are: opt bits E(32554) CCDS33358.1 MARS2 gene_id:92935|Hs108|chr2 ( 593) 4124 939.1 0 >>CCDS33358.1 MARS2 gene_id:92935|Hs108|chr2 (593 aa) initn: 4124 init1: 4124 opt: 4124 Z-score: 5021.2 bits: 939.1 E(32554): 0 Smith-Waterman score: 4124; 100.0% identity (100.0% similar) in 593 aa overlap (1-593:1-593) 10 20 30 40 50 60 pF1KE6 MLRTSVLRLLGRTGASRLSLLEDFGPRYYSSGSLSAGDDACDVRAYFTTPIFYVNAAPHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MLRTSVLRLLGRTGASRLSLLEDFGPRYYSSGSLSAGDDACDVRAYFTTPIFYVNAAPHI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 GHLYSALLADALCRHRRLRGPSTAATRFSTGTDEHGLKIQQAAATAGLAPTELCDRVSEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 GHLYSALLADALCRHRRLRGPSTAATRFSTGTDEHGLKIQQAAATAGLAPTELCDRVSEQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 FQQLFQEAGISCTDFIRTTEARHRVAVQHFWGVLKSRGLLYKGVYEGWYCASDECFLPEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 FQQLFQEAGISCTDFIRTTEARHRVAVQHFWGVLKSRGLLYKGVYEGWYCASDECFLPEA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 KVTQQPGPSGDSFPVSLESGHPVSWTKEENYIFRLSQFRKPLQRWLRGNPQAITPEPFHH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 KVTQQPGPSGDSFPVSLESGHPVSWTKEENYIFRLSQFRKPLQRWLRGNPQAITPEPFHH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 VVLQWLDEELPDLSVSRRSSHLHWGIPVPGDDSQTIYVWLDALVNYLTVIGYPNAEFKSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 VVLQWLDEELPDLSVSRRSSHLHWGIPVPGDDSQTIYVWLDALVNYLTVIGYPNAEFKSW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 WPATSHIIGKDILKFHAIYWPAFLLGAGMSPPQRICVHSHWTVCGQKMSKSLGNVVDPRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 WPATSHIIGKDILKFHAIYWPAFLLGAGMSPPQRICVHSHWTVCGQKMSKSLGNVVDPRT 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE6 CLNRYTVDGFRYFLLRQGVPNWDCDYYDEKVVKLLNSELADALGGLLNRCTAKRINPSET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 CLNRYTVDGFRYFLLRQGVPNWDCDYYDEKVVKLLNSELADALGGLLNRCTAKRINPSET 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE6 YPAFCTTCFPSEPGLVGPSVRAQAEDYALVSAVATLPKQVADHYDNFRIYKALEAVSSCV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 YPAFCTTCFPSEPGLVGPSVRAQAEDYALVSAVATLPKQVADHYDNFRIYKALEAVSSCV 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE6 RQTNGFVQRHAPWKLNWESPVDAPWLGTVLHVALECLRVFGTLLQPVTPSLADKLLSRLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 RQTNGFVQRHAPWKLNWESPVDAPWLGTVLHVALECLRVFGTLLQPVTPSLADKLLSRLG 490 500 510 520 530 540 550 560 570 580 590 pF1KE6 VSASERSLGELYFLPRFYGHPCPFEGRRLGPETGLLFPRLDQSRTWLVKAHRT ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 VSASERSLGELYFLPRFYGHPCPFEGRRLGPETGLLFPRLDQSRTWLVKAHRT 550 560 570 580 590 593 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 16:01:18 2016 done: Tue Nov 8 16:01:19 2016 Total Scan time: 3.380 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]