FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5131, 140 aa 1>>>pF1KE5131 140 - 140 aa - 140 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4104+/-0.000659; mu= 10.7624+/- 0.040 mean_var=62.4793+/-12.467, 0's: 0 Z-trim(110.3): 5 B-trim: 5 in 1/51 Lambda= 0.162258 statistics sampled from 11524 (11527) to 11524 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.354), width: 16 Scan time: 1.570 The best scores are: opt bits E(32554) CCDS33156.1 PTRHD1 gene_id:391356|Hs108|chr2 ( 140) 937 227.2 2.7e-60 >>CCDS33156.1 PTRHD1 gene_id:391356|Hs108|chr2 (140 aa) initn: 937 init1: 937 opt: 937 Z-score: 1196.1 bits: 227.2 E(32554): 2.7e-60 Smith-Waterman score: 937; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140) 10 20 30 40 50 60 pF1KE5 MHRGVGPAFRVVRKMAASGAEPQVLVQYLVLRKDLSQAPFSWPAGALVAQACHAATAALH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MHRGVGPAFRVVRKMAASGAEPQVLVQYLVLRKDLSQAPFSWPAGALVAQACHAATAALH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 THRDHPHTAAYLQELGRMRKVVLEAPDETTLKELAETLQQKNIDHMLWLEQPENIATCIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 THRDHPHTAAYLQELGRMRKVVLEAPDETTLKELAETLQQKNIDHMLWLEQPENIATCIA 70 80 90 100 110 120 130 140 pF1KE5 LRPYPKEEVGQYLKKFRLFK :::::::::::::::::::: CCDS33 LRPYPKEEVGQYLKKFRLFK 130 140 140 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:40:25 2016 done: Mon Nov 7 21:40:25 2016 Total Scan time: 1.570 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]