FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5146, 138 aa 1>>>pF1KE5146 138 - 138 aa - 138 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3842+/-0.000239; mu= 13.1019+/- 0.015 mean_var=85.2438+/-17.307, 0's: 0 Z-trim(124.0): 4 B-trim: 1035 in 1/57 Lambda= 0.138913 statistics sampled from 44728 (44741) to 44728 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.842), E-opt: 0.2 (0.525), width: 16 Scan time: 5.100 The best scores are: opt bits E(85289) NP_001025032 (OMIM: 608228) nanos homolog 2 [Homo ( 138) 994 207.2 6.7e-54 NP_001092092 (OMIM: 608229) nanos homolog 3 [Homo ( 192) 355 79.3 3e-15 XP_011526266 (OMIM: 608229) PREDICTED: nanos homol ( 196) 355 79.3 3.1e-15 NP_955631 (OMIM: 608226,615413) nanos homolog 1 [H ( 292) 284 65.2 8e-11 >>NP_001025032 (OMIM: 608228) nanos homolog 2 [Homo sapi (138 aa) initn: 994 init1: 994 opt: 994 Z-score: 1088.7 bits: 207.2 E(85289): 6.7e-54 Smith-Waterman score: 994; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138) 10 20 30 40 50 60 pF1KE5 MQLPPFDMWKDYFNLSQVVWALIASRGQRLETQEIEEPSPGPPLGQDQGLGAPGANGGLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQLPPFDMWKDYFNLSQVVWALIASRGQRLETQEIEEPSPGPPLGQDQGLGAPGANGGLG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 TLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCPLNGGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCPLNGGQ 70 80 90 100 110 120 130 pF1KE5 QSLYRRSGRNSAGRRVKR :::::::::::::::::: NP_001 QSLYRRSGRNSAGRRVKR 130 >>NP_001092092 (OMIM: 608229) nanos homolog 3 [Homo sapi (192 aa) initn: 457 init1: 292 opt: 355 Z-score: 394.7 bits: 79.3 E(85289): 3e-15 Smith-Waterman score: 402; 44.0% identity (64.7% similar) in 150 aa overlap (6-138:4-153) 10 20 30 40 50 pF1KE5 MQLPPFDMWKDYFNLSQVVWALIASRGQ--RLETQEIEEPSPGP-----PLGQDQGLGAP ::.: ::..:...: :: ...: :: : :: : :. ... .: NP_001 MGTFDLWTDYLGLAHLVRALSGKEGPETRLSPQPEPEPMLEPVSALEPMPAPESVPVP 10 20 30 40 50 60 70 80 90 100 pF1KE5 GANGGLGTL---------CNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGAT : . .: :.::::::::: .:.:: :: : :.::::: :::: :::: NP_001 GPKDQKRSLESSPAPERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGAT 60 70 80 90 100 110 110 120 130 pF1KE5 GDQAHTLKYCPLNG-GQQSLYRRSGRNSAGRRVKR ..::: ..:::.: : :.: .. :::::... : NP_001 RERAHTRRFCPLTGQGYTSVYSHTTRNSAGKKLVRPDKAKTQDTGHRRGGGGGAGFRGAG 120 130 140 150 160 170 NP_001 KSEPSPSCSPSMST 180 190 >>XP_011526266 (OMIM: 608229) PREDICTED: nanos homolog 3 (196 aa) initn: 435 init1: 292 opt: 355 Z-score: 394.6 bits: 79.3 E(85289): 3.1e-15 Smith-Waterman score: 402; 44.0% identity (64.7% similar) in 150 aa overlap (6-138:4-153) 10 20 30 40 50 pF1KE5 MQLPPFDMWKDYFNLSQVVWALIASRGQ--RLETQEIEEPSPGP-----PLGQDQGLGAP ::.: ::..:...: :: ...: :: : :: : :. ... .: XP_011 MGTFDLWTDYLGLAHLVRALSGKEGPETRLSPQPEPEPMLEPVSALEPMPAPESVPVP 10 20 30 40 50 60 70 80 90 100 pF1KE5 GANGGLGTL---------CNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGAT : . .: :.::::::::: .:.:: :: : :.::::: :::: :::: XP_011 GPKDQKRSLESSPAPERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGAT 60 70 80 90 100 110 110 120 130 pF1KE5 GDQAHTLKYCPLNG-GQQSLYRRSGRNSAGRRVKR ..::: ..:::.: : :.: .. :::::... : XP_011 RERAHTRRFCPLTGQGYTSVYSHTTRNSAGKKLVRPDKAKTQDTGHRRGGGGGAGACTGF 120 130 140 150 160 170 XP_011 RGAGKSEPSPSCSPSMST 180 190 >>NP_955631 (OMIM: 608226,615413) nanos homolog 1 [Homo (292 aa) initn: 371 init1: 271 opt: 284 Z-score: 315.3 bits: 65.2 E(85289): 8e-11 Smith-Waterman score: 284; 47.5% identity (76.2% similar) in 80 aa overlap (62-137:213-292) 40 50 60 70 80 90 pF1KE5 TQEIEEPSPGPPLGQDQGLGAPGANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCP .: ::..: :. .:..: :: ::: :.:: NP_955 EERAPAWAAEPRLHAASGAAAARLLKPELQVCVFCRNNKEAMALYTTHILKGPDGRVLCP 190 200 210 220 230 240 100 110 120 130 pF1KE5 ILRHYVCPVCGATGDQAHTLKYCPLNGGQQSLYR---RSGRNSA-GRRVKR .::.:.::.:::.::.:::.:::::. : ::.:.. :.... NP_955 VLRRYTCPLCGASGDNAHTIKYCPLSKVPPPPARPPPRSARDGPPGKKLR 250 260 270 280 290 138 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:49:01 2016 done: Mon Nov 7 21:49:01 2016 Total Scan time: 5.100 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]