FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5146, 138 aa 1>>>pF1KE5146 138 - 138 aa - 138 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7673+/-0.000516; mu= 11.1621+/- 0.031 mean_var=86.5875+/-17.327, 0's: 0 Z-trim(116.8): 4 B-trim: 0 in 0/51 Lambda= 0.137831 statistics sampled from 17445 (17449) to 17445 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.851), E-opt: 0.2 (0.536), width: 16 Scan time: 1.430 The best scores are: opt bits E(32554) CCDS33056.1 NANOS2 gene_id:339345|Hs108|chr19 ( 138) 994 205.7 7.2e-54 CCDS42511.1 NANOS3 gene_id:342977|Hs108|chr19 ( 192) 355 78.8 1.7e-15 CCDS7607.1 NANOS1 gene_id:340719|Hs108|chr10 ( 292) 284 64.8 4.2e-11 >>CCDS33056.1 NANOS2 gene_id:339345|Hs108|chr19 (138 aa) initn: 994 init1: 994 opt: 994 Z-score: 1080.5 bits: 205.7 E(32554): 7.2e-54 Smith-Waterman score: 994; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138) 10 20 30 40 50 60 pF1KE5 MQLPPFDMWKDYFNLSQVVWALIASRGQRLETQEIEEPSPGPPLGQDQGLGAPGANGGLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MQLPPFDMWKDYFNLSQVVWALIASRGQRLETQEIEEPSPGPPLGQDQGLGAPGANGGLG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 TLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCPLNGGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 TLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCPLNGGQ 70 80 90 100 110 120 130 pF1KE5 QSLYRRSGRNSAGRRVKR :::::::::::::::::: CCDS33 QSLYRRSGRNSAGRRVKR 130 >>CCDS42511.1 NANOS3 gene_id:342977|Hs108|chr19 (192 aa) initn: 457 init1: 292 opt: 355 Z-score: 391.8 bits: 78.8 E(32554): 1.7e-15 Smith-Waterman score: 402; 44.0% identity (64.7% similar) in 150 aa overlap (6-138:4-153) 10 20 30 40 50 pF1KE5 MQLPPFDMWKDYFNLSQVVWALIASRGQ--RLETQEIEEPSPGP-----PLGQDQGLGAP ::.: ::..:...: :: ...: :: : :: : :. ... .: CCDS42 MGTFDLWTDYLGLAHLVRALSGKEGPETRLSPQPEPEPMLEPVSALEPMPAPESVPVP 10 20 30 40 50 60 70 80 90 100 pF1KE5 GANGGLGTL---------CNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGAT : . .: :.::::::::: .:.:: :: : :.::::: :::: :::: CCDS42 GPKDQKRSLESSPAPERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGAT 60 70 80 90 100 110 110 120 130 pF1KE5 GDQAHTLKYCPLNG-GQQSLYRRSGRNSAGRRVKR ..::: ..:::.: : :.: .. :::::... : CCDS42 RERAHTRRFCPLTGQGYTSVYSHTTRNSAGKKLVRPDKAKTQDTGHRRGGGGGAGFRGAG 120 130 140 150 160 170 CCDS42 KSEPSPSCSPSMST 180 190 >>CCDS7607.1 NANOS1 gene_id:340719|Hs108|chr10 (292 aa) initn: 371 init1: 271 opt: 284 Z-score: 312.9 bits: 64.8 E(32554): 4.2e-11 Smith-Waterman score: 284; 47.5% identity (76.2% similar) in 80 aa overlap (62-137:213-292) 40 50 60 70 80 90 pF1KE5 TQEIEEPSPGPPLGQDQGLGAPGANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCP .: ::..: :. .:..: :: ::: :.:: CCDS76 EERAPAWAAEPRLHAASGAAAARLLKPELQVCVFCRNNKEAMALYTTHILKGPDGRVLCP 190 200 210 220 230 240 100 110 120 130 pF1KE5 ILRHYVCPVCGATGDQAHTLKYCPLNGGQQSLYR---RSGRNSA-GRRVKR .::.:.::.:::.::.:::.:::::. : ::.:.. :.... CCDS76 VLRRYTCPLCGASGDNAHTIKYCPLSKVPPPPARPPPRSARDGPPGKKLR 250 260 270 280 290 138 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:49:00 2016 done: Mon Nov 7 21:49:00 2016 Total Scan time: 1.430 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]