Result of FASTA (omim) for
pFN21AE4065
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4065, 346 aa
1>>>pF1KE4065 346 - 346 aa - 346 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6575+/-0.000352; mu= 6.8975+/- 0.022
mean_var=193.3286+/-38.684, 0's: 0 Z-trim(120.4): 130 B-trim: 0 in 0/57
Lambda= 0.092241
statistics sampled from 35362 (35517) to 35362 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.416), width: 16
Scan time: 8.840
The best scores are: opt bits E(85289)
XP_016877832 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 985) 865 127.6 1.1e-28
NP_001257458 (OMIM: 605840) E3 ubiquitin-protein l ( 985) 865 127.6 1.1e-28
NP_060080 (OMIM: 605840) E3 ubiquitin-protein liga ( 986) 865 127.6 1.1e-28
XP_016877831 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 986) 865 127.6 1.1e-28
XP_016877825 (OMIM: 605840) PREDICTED: E3 ubiquiti (1009) 865 127.7 1.1e-28
XP_011520001 (OMIM: 605840) PREDICTED: E3 ubiquiti (1014) 865 127.7 1.1e-28
XP_016877830 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 993) 850 125.7 4.4e-28
XP_016877829 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 993) 850 125.7 4.4e-28
NP_001257459 (OMIM: 605840) E3 ubiquitin-protein l ( 994) 850 125.7 4.4e-28
XP_016877827 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 994) 850 125.7 4.4e-28
XP_011519999 (OMIM: 605840) PREDICTED: E3 ubiquiti (1030) 850 125.7 4.5e-28
XP_016877828 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 994) 810 120.3 1.8e-26
NP_001257457 (OMIM: 605840) E3 ubiquitin-protein l ( 995) 810 120.3 1.8e-26
XP_011519998 (OMIM: 605840) PREDICTED: E3 ubiquiti (1031) 810 120.3 1.8e-26
XP_016877826 (OMIM: 605840) PREDICTED: E3 ubiquiti (1002) 777 115.9 3.7e-25
XP_006720642 (OMIM: 605840) PREDICTED: E3 ubiquiti (1003) 777 115.9 3.7e-25
NP_001317260 (OMIM: 605840) E3 ubiquitin-protein l (1003) 777 115.9 3.7e-25
XP_006720638 (OMIM: 605840) PREDICTED: E3 ubiquiti (1026) 777 116.0 3.8e-25
XP_011519996 (OMIM: 605840) PREDICTED: E3 ubiquiti (1039) 777 116.0 3.8e-25
XP_016869785 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 402) 222 41.7 0.0033
XP_016869786 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 402) 222 41.7 0.0033
NP_919309 (OMIM: 612488) E3 ubiquitin-protein liga ( 432) 222 41.7 0.0035
XP_011516014 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 222 41.7 0.0035
XP_006716784 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 222 41.7 0.0035
XP_005251425 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 222 41.7 0.0035
XP_005251424 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 222 41.7 0.0035
XP_005251423 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 222 41.7 0.0035
XP_016869784 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 222 41.7 0.0035
NP_919311 (OMIM: 612488) E3 ubiquitin-protein liga ( 432) 222 41.7 0.0035
XP_011516015 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 222 41.7 0.0035
NP_919313 (OMIM: 612488) E3 ubiquitin-protein liga ( 432) 222 41.7 0.0035
XP_016869783 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 444) 222 41.7 0.0036
NP_919310 (OMIM: 612488) E3 ubiquitin-protein liga ( 465) 222 41.8 0.0037
NP_115549 (OMIM: 612062) E3 ubiquitin-protein liga ( 836) 226 42.5 0.0039
XP_011528737 (OMIM: 612062) PREDICTED: E3 ubiquiti ( 841) 226 42.5 0.0039
XP_011528739 (OMIM: 612062) PREDICTED: E3 ubiquiti ( 841) 226 42.5 0.0039
XP_016884479 (OMIM: 612062) PREDICTED: E3 ubiquiti ( 841) 226 42.5 0.0039
XP_011528740 (OMIM: 612062) PREDICTED: E3 ubiquiti ( 841) 226 42.5 0.0039
XP_011528738 (OMIM: 612062) PREDICTED: E3 ubiquiti ( 841) 226 42.5 0.0039
NP_073618 (OMIM: 612488) E3 ubiquitin-protein liga ( 515) 222 41.8 0.004
NP_001193927 (OMIM: 612062) E3 ubiquitin-protein l ( 936) 226 42.6 0.0042
XP_016861150 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 193) 208 39.5 0.0072
XP_016861149 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 250) 208 39.6 0.0087
XP_016861145 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262) 208 39.7 0.0089
XP_011510678 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262) 208 39.7 0.0089
XP_016861146 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262) 208 39.7 0.0089
XP_016861147 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262) 208 39.7 0.0089
XP_005247149 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262) 208 39.7 0.0089
XP_016861148 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 262) 208 39.7 0.0089
>>XP_016877832 (OMIM: 605840) PREDICTED: E3 ubiquitin-pr (985 aa)
initn: 690 init1: 389 opt: 865 Z-score: 636.0 bits: 127.6 E(85289): 1.1e-28
Smith-Waterman score: 923; 42.3% identity (66.2% similar) in 364 aa overlap (12-346:636-985)
10 20 30
pF1KE4 MVLVHVGYLVLPVFGSVRNRGAP----FQRSQHPHATSCRH
: ..: :. : . : : .:..: :
XP_016 AAAAPSQPLSSIDGYGSSMVAQPQPQPPPQPSLSSCRHYMPPPYASLTRPLHHQASACPH
610 620 630 640 650 660
40 50 60 70 80
pF1KE4 FHLGPPQPQQLAP---DFPLAHPVQS-QPGLSAHMA--------PAHQHSGA--LHQSLT
: .:: :: : :. . :::.. . .:.: . :.: : : . : :
XP_016 SHGNPP-PQTQPPPQVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLASTAAPIPQHLP
670 680 690 700 710 720
90 100 110 120 130 140
pF1KE4 PL--PTLQFQDVTGPSFLPQALHQQYLLQQQLLEAQHRRLVSHPRRSQERVSVHPHRLHP
: : . .:.: : :: . ..:. .:.:.::...:: :..:: ::::.::
XP_016 PTHQPISHHIPATAPP--AQRLHPHEVMQR--MEVQRRRMMQHPTRAHERPPPHPHRMHP
730 740 750 760 770 780
150 160 170 180 190
pF1KE4 SFDFGQ-LQTPQ-----PRYLAEGTDWDLSVDAGLSPAQFQVRPIPQHYQHYLATPRMHH
.. :. ...:: :: : . :.:...::.. : . . : :: : ::.::
XP_016 NYGHGHHIHVPQTMSSHPRQAPERSAWELGIEAGVTAATYTPGALHPHLAHYHAPPRLHH
790 800 810 820 830 840
200 210 220 230 240 250
pF1KE4 FPRNSSSTQMVVHEIRNYPYPQLHFLALQGLNPSRHTSAVRESYEELLQLEDRLGNVTRG
. . .. ..: .. .::. ..... .::. . . : ..:::..::.:::::.::
XP_016 L--QLGALPLMVPDMAGYPH--IRYIS-SGLDGTSFRGPFRGNFEELIHLEERLGNVNRG
850 860 870 880 890
260 270 280 290 300 310
pF1KE4 AVQNTIERFTFPHKYKKRR---PQDGKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPC
: :.:::: :.:::::::. ::: .:: : ::.::::::::.::.:::::::::
XP_016 ASQGTIERCTYPHKYKKRKLHCKQDG----EEGTEEDTEEKCTICLSILEEGEDVRRLPC
900 910 920 930 940 950
320 330 340
pF1KE4 MHLFHQLCVDQWLAMSKKCPICRVDIETQLGADS
::::::.:::::: .:::::::::::.:: ..:
XP_016 MHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES
960 970 980
>>NP_001257458 (OMIM: 605840) E3 ubiquitin-protein ligas (985 aa)
initn: 690 init1: 389 opt: 865 Z-score: 636.0 bits: 127.6 E(85289): 1.1e-28
Smith-Waterman score: 923; 42.3% identity (66.2% similar) in 364 aa overlap (12-346:636-985)
10 20 30
pF1KE4 MVLVHVGYLVLPVFGSVRNRGAP----FQRSQHPHATSCRH
: ..: :. : . : : .:..: :
NP_001 AAAAPSQPLSSIDGYGSSMVAQPQPQPPPQPSLSSCRHYMPPPYASLTRPLHHQASACPH
610 620 630 640 650 660
40 50 60 70 80
pF1KE4 FHLGPPQPQQLAP---DFPLAHPVQS-QPGLSAHMA--------PAHQHSGA--LHQSLT
: .:: :: : :. . :::.. . .:.: . :.: : : . : :
NP_001 SHGNPP-PQTQPPPQVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLASTAAPIPQHLP
670 680 690 700 710 720
90 100 110 120 130 140
pF1KE4 PL--PTLQFQDVTGPSFLPQALHQQYLLQQQLLEAQHRRLVSHPRRSQERVSVHPHRLHP
: : . .:.: : :: . ..:. .:.:.::...:: :..:: ::::.::
NP_001 PTHQPISHHIPATAPP--AQRLHPHEVMQR--MEVQRRRMMQHPTRAHERPPPHPHRMHP
730 740 750 760 770 780
150 160 170 180 190
pF1KE4 SFDFGQ-LQTPQ-----PRYLAEGTDWDLSVDAGLSPAQFQVRPIPQHYQHYLATPRMHH
.. :. ...:: :: : . :.:...::.. : . . : :: : ::.::
NP_001 NYGHGHHIHVPQTMSSHPRQAPERSAWELGIEAGVTAATYTPGALHPHLAHYHAPPRLHH
790 800 810 820 830 840
200 210 220 230 240 250
pF1KE4 FPRNSSSTQMVVHEIRNYPYPQLHFLALQGLNPSRHTSAVRESYEELLQLEDRLGNVTRG
. . .. ..: .. .::. ..... .::. . . : ..:::..::.:::::.::
NP_001 L--QLGALPLMVPDMAGYPH--IRYIS-SGLDGTSFRGPFRGNFEELIHLEERLGNVNRG
850 860 870 880 890
260 270 280 290 300 310
pF1KE4 AVQNTIERFTFPHKYKKRR---PQDGKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPC
: :.:::: :.:::::::. ::: .:: : ::.::::::::.::.:::::::::
NP_001 ASQGTIERCTYPHKYKKRKLHCKQDG----EEGTEEDTEEKCTICLSILEEGEDVRRLPC
900 910 920 930 940 950
320 330 340
pF1KE4 MHLFHQLCVDQWLAMSKKCPICRVDIETQLGADS
::::::.:::::: .:::::::::::.:: ..:
NP_001 MHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES
960 970 980
>>NP_060080 (OMIM: 605840) E3 ubiquitin-protein ligase A (986 aa)
initn: 690 init1: 389 opt: 865 Z-score: 636.0 bits: 127.6 E(85289): 1.1e-28
Smith-Waterman score: 923; 42.3% identity (66.2% similar) in 364 aa overlap (12-346:637-986)
10 20 30
pF1KE4 MVLVHVGYLVLPVFGSVRNRGAP----FQRSQHPHATSCRH
: ..: :. : . : : .:..: :
NP_060 AAAAPSQPLSSIDGYGSSMVAQPQPQPPPQPSLSSCRHYMPPPYASLTRPLHHQASACPH
610 620 630 640 650 660
40 50 60 70 80
pF1KE4 FHLGPPQPQQLAP---DFPLAHPVQS-QPGLSAHMA--------PAHQHSGA--LHQSLT
: .:: :: : :. . :::.. . .:.: . :.: : : . : :
NP_060 SHGNPP-PQTQPPPQVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLASTAAPIPQHLP
670 680 690 700 710 720
90 100 110 120 130 140
pF1KE4 PL--PTLQFQDVTGPSFLPQALHQQYLLQQQLLEAQHRRLVSHPRRSQERVSVHPHRLHP
: : . .:.: : :: . ..:. .:.:.::...:: :..:: ::::.::
NP_060 PTHQPISHHIPATAPP--AQRLHPHEVMQR--MEVQRRRMMQHPTRAHERPPPHPHRMHP
730 740 750 760 770 780
150 160 170 180 190
pF1KE4 SFDFGQ-LQTPQ-----PRYLAEGTDWDLSVDAGLSPAQFQVRPIPQHYQHYLATPRMHH
.. :. ...:: :: : . :.:...::.. : . . : :: : ::.::
NP_060 NYGHGHHIHVPQTMSSHPRQAPERSAWELGIEAGVTAATYTPGALHPHLAHYHAPPRLHH
790 800 810 820 830 840
200 210 220 230 240 250
pF1KE4 FPRNSSSTQMVVHEIRNYPYPQLHFLALQGLNPSRHTSAVRESYEELLQLEDRLGNVTRG
. . .. ..: .. .::. ..... .::. . . : ..:::..::.:::::.::
NP_060 L--QLGALPLMVPDMAGYPH--IRYIS-SGLDGTSFRGPFRGNFEELIHLEERLGNVNRG
850 860 870 880 890
260 270 280 290 300 310
pF1KE4 AVQNTIERFTFPHKYKKRR---PQDGKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPC
: :.:::: :.:::::::. ::: .:: : ::.::::::::.::.:::::::::
NP_060 ASQGTIERCTYPHKYKKRKLHCKQDG----EEGTEEDTEEKCTICLSILEEGEDVRRLPC
900 910 920 930 940 950
320 330 340
pF1KE4 MHLFHQLCVDQWLAMSKKCPICRVDIETQLGADS
::::::.:::::: .:::::::::::.:: ..:
NP_060 MHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES
960 970 980
>>XP_016877831 (OMIM: 605840) PREDICTED: E3 ubiquitin-pr (986 aa)
initn: 690 init1: 389 opt: 865 Z-score: 636.0 bits: 127.6 E(85289): 1.1e-28
Smith-Waterman score: 923; 42.3% identity (66.2% similar) in 364 aa overlap (12-346:637-986)
10 20 30
pF1KE4 MVLVHVGYLVLPVFGSVRNRGAP----FQRSQHPHATSCRH
: ..: :. : . : : .:..: :
XP_016 AAAAPSQPLSSIDGYGSSMVAQPQPQPPPQPSLSSCRHYMPPPYASLTRPLHHQASACPH
610 620 630 640 650 660
40 50 60 70 80
pF1KE4 FHLGPPQPQQLAP---DFPLAHPVQS-QPGLSAHMA--------PAHQHSGA--LHQSLT
: .:: :: : :. . :::.. . .:.: . :.: : : . : :
XP_016 SHGNPP-PQTQPPPQVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLASTAAPIPQHLP
670 680 690 700 710 720
90 100 110 120 130 140
pF1KE4 PL--PTLQFQDVTGPSFLPQALHQQYLLQQQLLEAQHRRLVSHPRRSQERVSVHPHRLHP
: : . .:.: : :: . ..:. .:.:.::...:: :..:: ::::.::
XP_016 PTHQPISHHIPATAPP--AQRLHPHEVMQR--MEVQRRRMMQHPTRAHERPPPHPHRMHP
730 740 750 760 770 780
150 160 170 180 190
pF1KE4 SFDFGQ-LQTPQ-----PRYLAEGTDWDLSVDAGLSPAQFQVRPIPQHYQHYLATPRMHH
.. :. ...:: :: : . :.:...::.. : . . : :: : ::.::
XP_016 NYGHGHHIHVPQTMSSHPRQAPERSAWELGIEAGVTAATYTPGALHPHLAHYHAPPRLHH
790 800 810 820 830 840
200 210 220 230 240 250
pF1KE4 FPRNSSSTQMVVHEIRNYPYPQLHFLALQGLNPSRHTSAVRESYEELLQLEDRLGNVTRG
. . .. ..: .. .::. ..... .::. . . : ..:::..::.:::::.::
XP_016 L--QLGALPLMVPDMAGYPH--IRYIS-SGLDGTSFRGPFRGNFEELIHLEERLGNVNRG
850 860 870 880 890
260 270 280 290 300 310
pF1KE4 AVQNTIERFTFPHKYKKRR---PQDGKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPC
: :.:::: :.:::::::. ::: .:: : ::.::::::::.::.:::::::::
XP_016 ASQGTIERCTYPHKYKKRKLHCKQDG----EEGTEEDTEEKCTICLSILEEGEDVRRLPC
900 910 920 930 940 950
320 330 340
pF1KE4 MHLFHQLCVDQWLAMSKKCPICRVDIETQLGADS
::::::.:::::: .:::::::::::.:: ..:
XP_016 MHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES
960 970 980
>>XP_016877825 (OMIM: 605840) PREDICTED: E3 ubiquitin-pr (1009 aa)
initn: 690 init1: 389 opt: 865 Z-score: 635.9 bits: 127.7 E(85289): 1.1e-28
Smith-Waterman score: 923; 42.3% identity (66.2% similar) in 364 aa overlap (12-346:660-1009)
10 20 30
pF1KE4 MVLVHVGYLVLPVFGSVRNRGAP----FQRSQHPHATSCRH
: ..: :. : . : : .:..: :
XP_016 AAAAPSQPLSSIDGYGSSMVAQPQPQPPPQPSLSSCRHYMPPPYASLTRPLHHQASACPH
630 640 650 660 670 680
40 50 60 70 80
pF1KE4 FHLGPPQPQQLAP---DFPLAHPVQS-QPGLSAHMA--------PAHQHSGA--LHQSLT
: .:: :: : :. . :::.. . .:.: . :.: : : . : :
XP_016 SHGNPP-PQTQPPPQVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLASTAAPIPQHLP
690 700 710 720 730 740
90 100 110 120 130 140
pF1KE4 PL--PTLQFQDVTGPSFLPQALHQQYLLQQQLLEAQHRRLVSHPRRSQERVSVHPHRLHP
: : . .:.: : :: . ..:. .:.:.::...:: :..:: ::::.::
XP_016 PTHQPISHHIPATAPP--AQRLHPHEVMQR--MEVQRRRMMQHPTRAHERPPPHPHRMHP
750 760 770 780 790 800
150 160 170 180 190
pF1KE4 SFDFGQ-LQTPQ-----PRYLAEGTDWDLSVDAGLSPAQFQVRPIPQHYQHYLATPRMHH
.. :. ...:: :: : . :.:...::.. : . . : :: : ::.::
XP_016 NYGHGHHIHVPQTMSSHPRQAPERSAWELGIEAGVTAATYTPGALHPHLAHYHAPPRLHH
810 820 830 840 850 860
200 210 220 230 240 250
pF1KE4 FPRNSSSTQMVVHEIRNYPYPQLHFLALQGLNPSRHTSAVRESYEELLQLEDRLGNVTRG
. . .. ..: .. .::. ..... .::. . . : ..:::..::.:::::.::
XP_016 L--QLGALPLMVPDMAGYPH--IRYIS-SGLDGTSFRGPFRGNFEELIHLEERLGNVNRG
870 880 890 900 910
260 270 280 290 300 310
pF1KE4 AVQNTIERFTFPHKYKKRR---PQDGKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPC
: :.:::: :.:::::::. ::: .:: : ::.::::::::.::.:::::::::
XP_016 ASQGTIERCTYPHKYKKRKLHCKQDG----EEGTEEDTEEKCTICLSILEEGEDVRRLPC
920 930 940 950 960 970
320 330 340
pF1KE4 MHLFHQLCVDQWLAMSKKCPICRVDIETQLGADS
::::::.:::::: .:::::::::::.:: ..:
XP_016 MHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES
980 990 1000
>>XP_011520001 (OMIM: 605840) PREDICTED: E3 ubiquitin-pr (1014 aa)
initn: 690 init1: 389 opt: 865 Z-score: 635.9 bits: 127.7 E(85289): 1.1e-28
Smith-Waterman score: 923; 42.3% identity (66.2% similar) in 364 aa overlap (12-346:665-1014)
10 20 30
pF1KE4 MVLVHVGYLVLPVFGSVRNRGAP----FQRSQHPHATSCRH
: ..: :. : . : : .:..: :
XP_011 AAAAPSQPLSSIDGYGSSMVAQPQPQPPPQPSLSSCRHYMPPPYASLTRPLHHQASACPH
640 650 660 670 680 690
40 50 60 70 80
pF1KE4 FHLGPPQPQQLAP---DFPLAHPVQS-QPGLSAHMA--------PAHQHSGA--LHQSLT
: .:: :: : :. . :::.. . .:.: . :.: : : . : :
XP_011 SHGNPP-PQTQPPPQVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLASTAAPIPQHLP
700 710 720 730 740 750
90 100 110 120 130 140
pF1KE4 PL--PTLQFQDVTGPSFLPQALHQQYLLQQQLLEAQHRRLVSHPRRSQERVSVHPHRLHP
: : . .:.: : :: . ..:. .:.:.::...:: :..:: ::::.::
XP_011 PTHQPISHHIPATAPP--AQRLHPHEVMQR--MEVQRRRMMQHPTRAHERPPPHPHRMHP
760 770 780 790 800
150 160 170 180 190
pF1KE4 SFDFGQ-LQTPQ-----PRYLAEGTDWDLSVDAGLSPAQFQVRPIPQHYQHYLATPRMHH
.. :. ...:: :: : . :.:...::.. : . . : :: : ::.::
XP_011 NYGHGHHIHVPQTMSSHPRQAPERSAWELGIEAGVTAATYTPGALHPHLAHYHAPPRLHH
810 820 830 840 850 860
200 210 220 230 240 250
pF1KE4 FPRNSSSTQMVVHEIRNYPYPQLHFLALQGLNPSRHTSAVRESYEELLQLEDRLGNVTRG
. . .. ..: .. .::. ..... .::. . . : ..:::..::.:::::.::
XP_011 L--QLGALPLMVPDMAGYPH--IRYIS-SGLDGTSFRGPFRGNFEELIHLEERLGNVNRG
870 880 890 900 910 920
260 270 280 290 300 310
pF1KE4 AVQNTIERFTFPHKYKKRR---PQDGKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPC
: :.:::: :.:::::::. ::: .:: : ::.::::::::.::.:::::::::
XP_011 ASQGTIERCTYPHKYKKRKLHCKQDG----EEGTEEDTEEKCTICLSILEEGEDVRRLPC
930 940 950 960 970 980
320 330 340
pF1KE4 MHLFHQLCVDQWLAMSKKCPICRVDIETQLGADS
::::::.:::::: .:::::::::::.:: ..:
XP_011 MHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES
990 1000 1010
>>XP_016877830 (OMIM: 605840) PREDICTED: E3 ubiquitin-pr (993 aa)
initn: 798 init1: 377 opt: 850 Z-score: 625.2 bits: 125.7 E(85289): 4.4e-28
Smith-Waterman score: 903; 41.3% identity (64.9% similar) in 368 aa overlap (12-346:636-993)
10 20 30
pF1KE4 MVLVHVGYLVLPVFGSVRNRGAP----FQRSQHPHATSCRH
: ..: :. : . : : .:..: :
XP_016 AAAAPSQPLSSIDGYGSSMVAQPQPQPPPQPSLSSCRHYMPPPYASLTRPLHHQASACPH
610 620 630 640 650 660
40 50 60 70 80
pF1KE4 FHLGPPQPQQLAP---DFPLAHPVQS-QPGLSAHMA--------PAHQHSGA--LHQSLT
: .:: :: : :. . :::.. . .:.: . :.: : : . : :
XP_016 SHGNPP-PQTQPPPQVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLASTAAPIPQHLP
670 680 690 700 710 720
90 100 110 120 130 140
pF1KE4 PL--PTLQFQDVTGPSFLPQALHQQYLLQQQLLEAQHRRLVSHPRRSQERVSVHPHRLHP
: : . .:.: : :: . ..:. .:.:.::...:: :..:: ::::.::
XP_016 PTHQPISHHIPATAPP--AQRLHPHEVMQR--MEVQRRRMMQHPTRAHERPPPHPHRMHP
730 740 750 760 770 780
150 160 170 180 190
pF1KE4 SFDFGQ-LQTPQ-----PRYLAEGTDWDLSVDAGLSPAQFQVRPIPQHYQHYLATPRMHH
.. :. ...:: :: : . :.:...::.. : . . : :: : ::.::
XP_016 NYGHGHHIHVPQTMSSHPRQAPERSAWELGIEAGVTAATYTPGALHPHLAHYHAPPRLHH
790 800 810 820 830 840
200 210 220 230 240 250
pF1KE4 FPRNSSSTQMVVHEIRNYPYPQLHFLALQGLNPSRHTSAVRESYEELLQLEDRLGNVTRG
. . .. ..: .. .::. ..... .::. . . : ..:::..::.:::::.::
XP_016 L--QLGALPLMVPDMAGYPH--IRYIS-SGLDGTSFRGPFRGNFEELIHLEERLGNVNRG
850 860 870 880 890
260 270 280 290 300
pF1KE4 AVQNTIERFTFPHKYKK-------RRPQDGKGKKDEGEESDTDEKCTICLSMLEDGEDVR
: :.:::: :.:::::: .: : .:: : ::.::::::::.::.:::::
XP_016 ASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTEEKCTICLSILEEGEDVR
900 910 920 930 940 950
310 320 330 340
pF1KE4 RLPCMHLFHQLCVDQWLAMSKKCPICRVDIETQLGADS
::::::::::.:::::: .:::::::::::.:: ..:
XP_016 RLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES
960 970 980 990
>>XP_016877829 (OMIM: 605840) PREDICTED: E3 ubiquitin-pr (993 aa)
initn: 798 init1: 377 opt: 850 Z-score: 625.2 bits: 125.7 E(85289): 4.4e-28
Smith-Waterman score: 903; 41.3% identity (64.9% similar) in 368 aa overlap (12-346:636-993)
10 20 30
pF1KE4 MVLVHVGYLVLPVFGSVRNRGAP----FQRSQHPHATSCRH
: ..: :. : . : : .:..: :
XP_016 AAAAPSQPLSSIDGYGSSMVAQPQPQPPPQPSLSSCRHYMPPPYASLTRPLHHQASACPH
610 620 630 640 650 660
40 50 60 70 80
pF1KE4 FHLGPPQPQQLAP---DFPLAHPVQS-QPGLSAHMA--------PAHQHSGA--LHQSLT
: .:: :: : :. . :::.. . .:.: . :.: : : . : :
XP_016 SHGNPP-PQTQPPPQVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLASTAAPIPQHLP
670 680 690 700 710 720
90 100 110 120 130 140
pF1KE4 PL--PTLQFQDVTGPSFLPQALHQQYLLQQQLLEAQHRRLVSHPRRSQERVSVHPHRLHP
: : . .:.: : :: . ..:. .:.:.::...:: :..:: ::::.::
XP_016 PTHQPISHHIPATAPP--AQRLHPHEVMQR--MEVQRRRMMQHPTRAHERPPPHPHRMHP
730 740 750 760 770 780
150 160 170 180 190
pF1KE4 SFDFGQ-LQTPQ-----PRYLAEGTDWDLSVDAGLSPAQFQVRPIPQHYQHYLATPRMHH
.. :. ...:: :: : . :.:...::.. : . . : :: : ::.::
XP_016 NYGHGHHIHVPQTMSSHPRQAPERSAWELGIEAGVTAATYTPGALHPHLAHYHAPPRLHH
790 800 810 820 830 840
200 210 220 230 240 250
pF1KE4 FPRNSSSTQMVVHEIRNYPYPQLHFLALQGLNPSRHTSAVRESYEELLQLEDRLGNVTRG
. . .. ..: .. .::. ..... .::. . . : ..:::..::.:::::.::
XP_016 L--QLGALPLMVPDMAGYPH--IRYIS-SGLDGTSFRGPFRGNFEELIHLEERLGNVNRG
850 860 870 880 890
260 270 280 290 300
pF1KE4 AVQNTIERFTFPHKYKK-------RRPQDGKGKKDEGEESDTDEKCTICLSMLEDGEDVR
: :.:::: :.:::::: .: : .:: : ::.::::::::.::.:::::
XP_016 ASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTEEKCTICLSILEEGEDVR
900 910 920 930 940 950
310 320 330 340
pF1KE4 RLPCMHLFHQLCVDQWLAMSKKCPICRVDIETQLGADS
::::::::::.:::::: .:::::::::::.:: ..:
XP_016 RLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES
960 970 980 990
>>NP_001257459 (OMIM: 605840) E3 ubiquitin-protein ligas (994 aa)
initn: 798 init1: 377 opt: 850 Z-score: 625.2 bits: 125.7 E(85289): 4.4e-28
Smith-Waterman score: 903; 41.3% identity (64.9% similar) in 368 aa overlap (12-346:637-994)
10 20 30
pF1KE4 MVLVHVGYLVLPVFGSVRNRGAP----FQRSQHPHATSCRH
: ..: :. : . : : .:..: :
NP_001 AAAAPSQPLSSIDGYGSSMVAQPQPQPPPQPSLSSCRHYMPPPYASLTRPLHHQASACPH
610 620 630 640 650 660
40 50 60 70 80
pF1KE4 FHLGPPQPQQLAP---DFPLAHPVQS-QPGLSAHMA--------PAHQHSGA--LHQSLT
: .:: :: : :. . :::.. . .:.: . :.: : : . : :
NP_001 SHGNPP-PQTQPPPQVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLASTAAPIPQHLP
670 680 690 700 710 720
90 100 110 120 130 140
pF1KE4 PL--PTLQFQDVTGPSFLPQALHQQYLLQQQLLEAQHRRLVSHPRRSQERVSVHPHRLHP
: : . .:.: : :: . ..:. .:.:.::...:: :..:: ::::.::
NP_001 PTHQPISHHIPATAPP--AQRLHPHEVMQR--MEVQRRRMMQHPTRAHERPPPHPHRMHP
730 740 750 760 770 780
150 160 170 180 190
pF1KE4 SFDFGQ-LQTPQ-----PRYLAEGTDWDLSVDAGLSPAQFQVRPIPQHYQHYLATPRMHH
.. :. ...:: :: : . :.:...::.. : . . : :: : ::.::
NP_001 NYGHGHHIHVPQTMSSHPRQAPERSAWELGIEAGVTAATYTPGALHPHLAHYHAPPRLHH
790 800 810 820 830 840
200 210 220 230 240 250
pF1KE4 FPRNSSSTQMVVHEIRNYPYPQLHFLALQGLNPSRHTSAVRESYEELLQLEDRLGNVTRG
. . .. ..: .. .::. ..... .::. . . : ..:::..::.:::::.::
NP_001 L--QLGALPLMVPDMAGYPH--IRYIS-SGLDGTSFRGPFRGNFEELIHLEERLGNVNRG
850 860 870 880 890
260 270 280 290 300
pF1KE4 AVQNTIERFTFPHKYKK-------RRPQDGKGKKDEGEESDTDEKCTICLSMLEDGEDVR
: :.:::: :.:::::: .: : .:: : ::.::::::::.::.:::::
NP_001 ASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTEEKCTICLSILEEGEDVR
900 910 920 930 940 950
310 320 330 340
pF1KE4 RLPCMHLFHQLCVDQWLAMSKKCPICRVDIETQLGADS
::::::::::.:::::: .:::::::::::.:: ..:
NP_001 RLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES
960 970 980 990
>>XP_016877827 (OMIM: 605840) PREDICTED: E3 ubiquitin-pr (994 aa)
initn: 798 init1: 377 opt: 850 Z-score: 625.2 bits: 125.7 E(85289): 4.4e-28
Smith-Waterman score: 903; 41.3% identity (64.9% similar) in 368 aa overlap (12-346:637-994)
10 20 30
pF1KE4 MVLVHVGYLVLPVFGSVRNRGAP----FQRSQHPHATSCRH
: ..: :. : . : : .:..: :
XP_016 AAAAPSQPLSSIDGYGSSMVAQPQPQPPPQPSLSSCRHYMPPPYASLTRPLHHQASACPH
610 620 630 640 650 660
40 50 60 70 80
pF1KE4 FHLGPPQPQQLAP---DFPLAHPVQS-QPGLSAHMA--------PAHQHSGA--LHQSLT
: .:: :: : :. . :::.. . .:.: . :.: : : . : :
XP_016 SHGNPP-PQTQPPPQVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLASTAAPIPQHLP
670 680 690 700 710 720
90 100 110 120 130 140
pF1KE4 PL--PTLQFQDVTGPSFLPQALHQQYLLQQQLLEAQHRRLVSHPRRSQERVSVHPHRLHP
: : . .:.: : :: . ..:. .:.:.::...:: :..:: ::::.::
XP_016 PTHQPISHHIPATAPP--AQRLHPHEVMQR--MEVQRRRMMQHPTRAHERPPPHPHRMHP
730 740 750 760 770 780
150 160 170 180 190
pF1KE4 SFDFGQ-LQTPQ-----PRYLAEGTDWDLSVDAGLSPAQFQVRPIPQHYQHYLATPRMHH
.. :. ...:: :: : . :.:...::.. : . . : :: : ::.::
XP_016 NYGHGHHIHVPQTMSSHPRQAPERSAWELGIEAGVTAATYTPGALHPHLAHYHAPPRLHH
790 800 810 820 830 840
200 210 220 230 240 250
pF1KE4 FPRNSSSTQMVVHEIRNYPYPQLHFLALQGLNPSRHTSAVRESYEELLQLEDRLGNVTRG
. . .. ..: .. .::. ..... .::. . . : ..:::..::.:::::.::
XP_016 L--QLGALPLMVPDMAGYPH--IRYIS-SGLDGTSFRGPFRGNFEELIHLEERLGNVNRG
850 860 870 880 890
260 270 280 290 300
pF1KE4 AVQNTIERFTFPHKYKK-------RRPQDGKGKKDEGEESDTDEKCTICLSMLEDGEDVR
: :.:::: :.:::::: .: : .:: : ::.::::::::.::.:::::
XP_016 ASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTEEKCTICLSILEEGEDVR
900 910 920 930 940 950
310 320 330 340
pF1KE4 RLPCMHLFHQLCVDQWLAMSKKCPICRVDIETQLGADS
::::::::::.:::::: .:::::::::::.:: ..:
XP_016 RLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES
960 970 980 990
346 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:00:41 2016 done: Sun Nov 6 04:00:43 2016
Total Scan time: 8.840 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]