FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4107, 478 aa
  1>>>pF1KE4107 478 - 478 aa - 478 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7713+/-0.00084; mu= 15.8892+/- 0.051
 mean_var=77.2784+/-15.328, 0's: 0 Z-trim(108.2): 47  B-trim: 0 in 0/49
 Lambda= 0.145897
 statistics sampled from 9993 (10040) to 9993 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.308), width:  16
 Scan time:  3.460

The best scores are:                                      opt bits E(32554)
CCDS32719.1 BTBD17 gene_id:388419|Hs108|chr17      ( 478) 3203 683.7 1.2e-196
CCDS11759.1 LGALS3BP gene_id:3959|Hs108|chr17      ( 585)  429 99.8   8e-21


>>CCDS32719.1 BTBD17 gene_id:388419|Hs108|chr17           (478 aa)
 initn: 3203 init1: 3203 opt: 3203  Z-score: 3644.2  bits: 683.7 E(32554): 1.2e-196
Smith-Waterman score: 3203; 100.0% identity (100.0% similar) in 478 aa overlap (1-478:1-478)

               10        20        30        40        50        60
pF1KE4 MPRRGYSKPGSWGSFWAMLTLVGLVTHAAQRADVGGEAAGTSINHSQAVLQRLQELLRQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MPRRGYSKPGSWGSFWAMLTLVGLVTHAAQRADVGGEAAGTSINHSQAVLQRLQELLRQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 NASDVVLRVQAAGTDEVRVFHAHRLLLGLHSELFLELLSNQSEAVLQEPQDCAAVFDKFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NASDVVLRVQAAGTDEVRVFHAHRLLLGLHSELFLELLSNQSEAVLQEPQDCAAVFDKFI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 RYLYCGELTVLLTQAIPLHRLATKYGVSSLQRGVADYMRAHLAGGAGPAVGWYHYAVGTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RYLYCGELTVLLTQAIPLHRLATKYGVSSLQRGVADYMRAHLAGGAGPAVGWYHYAVGTG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 DEALRESCLQFLAWNLSAVAASTEWGAVSPELLWQLLQRSDLVLQDELELFHALEAWLGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DEALRESCLQFLAWNLSAVAASTEWGAVSPELLWQLLQRSDLVLQDELELFHALEAWLGR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 ARPPPAVAERALRAIRYPMIPPAQLFQLQARSAALARHGPAVADLLLQAYQFHAASPLHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ARPPPAVAERALRAIRYPMIPPAQLFQLQARSAALARHGPAVADLLLQAYQFHAASPLHY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 AKFFDVNGSAFLPRNYLAPAWGAPWVINNPARDDRSTSFQTQLGPSGHDAGRRVTWNVLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AKFFDVNGSAFLPRNYLAPAWGAPWVINNPARDDRSTSFQTQLGPSGHDAGRRVTWNVLF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 SPRWLPVSLRPVYADAAGTALPAARPEDGRPRLVVTPASSGGDAAGVSFQKTVLVGARQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SPRWLPVSLRPVYADAAGTALPAARPEDGRPRLVVTPASSGGDAAGVSFQKTVLVGARQQ
              370       380       390       400       410       420

              430       440       450       460       470        
pF1KE4 GRLLVRHAYSFHQSSEEAGDFLAHADLQRRNSEYLVENALHLHLIVKPVYHTLIRTPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GRLLVRHAYSFHQSSEEAGDFLAHADLQRRNSEYLVENALHLHLIVKPVYHTLIRTPK
              430       440       450       460       470        

>>CCDS11759.1 LGALS3BP gene_id:3959|Hs108|chr17           (585 aa)
 initn: 421 init1: 292 opt: 429  Z-score: 487.3  bits: 99.8 E(32554): 8e-21
Smith-Waterman score: 429; 29.3% identity (58.3% similar) in 314 aa overlap (42-345:132-438)

              20        30        40        50        60        70 
pF1KE4 WGSFWAMLTLVGLVTHAAQRADVGGEAAGTSINHSQAVLQRLQELLRQGNASDVVLRVQA
                                     ... :. . . : ... .  . :. . :..
CCDS11 DCKSLGWLKSNCRHERDAGVVCTNETRSTHTLDLSRELSEALGQIFDSQRGCDLSISVNV
             110       120       130       140       150       160 

              80        90          100       110       120        
pF1KE4 AGTDEVRVFHAHRLLLGLHSE---LFLELLSNQSEAVLQEPQDCAAVFDKFIRYLYCGEL
        : : .  : .: ..:  . :   :. :  :: . .:  :   :. .   ..::.:  ..
CCDS11 QGEDALG-FCGHTVILTANLEAQALWKEPGSNVTMSVDAE---CVPMVRDLLRYFYSRRI
              170       180       190       200          210       

      130       140       150       160          170       180     
pF1KE4 TVLLTQAIPLHRLATKYGVSSLQRGVADYMRAHLAGGAG---PAVGWYHYAVGTGDEALR
        . :...  .:.::. ::. .::   :. .   :    .   : .  : :::.:::  :.
CCDS11 DITLSSVKCFHKLASAYGARQLQGYCASLFAILLPQDPSFQMP-LDLYAYAVATGDALLE
       220       230       240       250       260        270      

         190       200       210       220       230       240     
pF1KE4 ESCLQFLAWNLSAVAASTEWGAVSPELLWQLLQRSDLVLQDELELFHALEAWLGRARPPP
       . ::::::::. :.. .  : .:  .::  :: ::::.. .:: :..:...:    :   
CCDS11 KLCLQFLAWNFEALTQAEAWPSVPTDLLQLLLPRSDLAVPSELALLKAVDTWSWGERASH
        280       290       300       310       320       330      

         250       260       270       280       290       300     
pF1KE4 AVAERALRAIRYPMIPPAQLFQLQARSAALARHGPAVADLLLQAYQFHAASPLHYAKFFD
         .:  .. ::.::. : .::.::   .    :        ::: .::..     :..  
CCDS11 EEVEGLVEKIRFPMMLPEELFELQFNLSLYWSHEALFQKKTLQALEFHTVPFQLLARYKG
        340       350       360       370       380       390      

           310       320       330         340       350       360 
pF1KE4 VNGS--AFLPRNYLAPAWGAPWVINNPARDDRSTS--FQTQLGPSGHDAGRRVTWNVLFS
       .: .  .. :: : .:.:.:   ... . . :...  .:.. ::                
CCDS11 LNLTEDTYKPRIYTSPTWSA--FVTDSSWSARKSQLVYQSRRGPLVKYSSDYFQAPSDYR
        400       410         420       430       440       450    

             370       380       390       400       410       420 
pF1KE4 PRWLPVSLRPVYADAAGTALPAARPEDGRPRLVVTPASSGGDAAGVSFQKTVLVGARQQG
                                                                   
CCDS11 YYPYQSFQTPQHPSFLFQDKRVSWSLVYLPTIQSCWNYGFSCSSDELPVLGLTKSGGSDR
          460       470       480       490       500       510    




478 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 01:42:49 2016 done: Sun Nov  6 01:42:49 2016
 Total Scan time:  3.460 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]