Result of FASTA (omim) for
pFN21AB8941
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8941, 301 aa
1>>>pF1KB8941 301 - 301 aa - 301 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.9662+/-0.00035; mu= 1.9810+/- 0.022
mean_var=316.0680+/-63.772, 0's: 0 Z-trim(124.8): 193 B-trim: 33 in 1/58
Lambda= 0.072141
statistics sampled from 46927 (47136) to 46927 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.553), width: 16
Scan time: 9.460
The best scores are: opt bits E(85289)
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301) 2090 230.1 4e-60
NP_005513 (OMIM: 142955,601536) homeobox protein H ( 335) 627 77.9 3e-14
NP_078777 (OMIM: 142987) homeobox protein Hox-D1 [ ( 328) 538 68.7 1.8e-11
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 377 51.9 2.1e-06
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 367 50.9 4e-06
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 363 50.3 4.8e-06
NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265) 349 48.9 1.3e-05
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 344 48.3 1.8e-05
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 346 48.8 2.2e-05
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 346 48.8 2.2e-05
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 346 48.8 2.2e-05
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 346 48.8 2.2e-05
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 346 48.8 2.2e-05
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 346 48.8 2.2e-05
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 346 48.8 2.2e-05
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 346 48.8 2.2e-05
XP_005257332 (OMIM: 142967) PREDICTED: homeobox pr ( 247) 340 47.9 2.4e-05
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 330 46.8 4.6e-05
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 330 46.8 4.6e-05
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 330 46.8 4.6e-05
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 330 46.9 5.2e-05
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 330 46.9 5.2e-05
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 330 46.9 5.5e-05
NP_001256 (OMIM: 600297) homeobox protein CDX-2 [H ( 313) 318 45.7 0.00014
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 315 45.6 0.00021
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 315 45.6 0.00021
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 315 45.6 0.00021
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 315 45.6 0.00021
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 315 45.6 0.00021
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 315 45.6 0.00021
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 315 45.6 0.00021
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 313 45.3 0.00022
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 304 44.1 0.0003
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 301 43.9 0.00045
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 301 44.0 0.00051
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 301 44.0 0.00051
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 301 44.1 0.00057
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 301 44.1 0.00057
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 301 44.1 0.00057
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 301 44.1 0.00057
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 301 44.1 0.00057
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 301 44.1 0.00057
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 301 44.1 0.00057
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 301 44.2 0.00062
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 294 43.1 0.00067
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 301 44.3 0.00069
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 301 44.3 0.00069
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 301 44.3 0.00069
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 301 44.3 0.00069
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 301 44.3 0.00069
>>NP_002135 (OMIM: 142968,614744) homeobox protein Hox-B (301 aa)
initn: 2090 init1: 2090 opt: 2090 Z-score: 1200.3 bits: 230.1 E(85289): 4e-60
Smith-Waterman score: 2090; 99.7% identity (99.7% similar) in 301 aa overlap (1-301:1-301)
10 20 30 40 50 60
pF1KB8 MDYNRMNSFLEYPLCNRGPSAYSAHSAPTSFPPSSAQAVDSYASEGRYGGGLSSPAFQQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MDYNRMNSFLEYPLCNRGPSAYSAHSAPTSFPPSSAQAVDSYASEGRYGGGLSSPAFQQN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SGYPAQQPPSTLGVPFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SGYPAQQPPSTLGVPFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 GGLSDGYGAGGAGPGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPNTPTARTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GGLSDGYGAGGAGPGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPNTPTARTF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 DWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 ELNETQVKIWFQNRRMKQKKREREGGRVPPAPPGCPKEAAGDASDQSTCTSPEASPSSVT
:::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
NP_002 ELNETQVKIWFQNRRMKQKKREREEGRVPPAPPGCPKEAAGDASDQSTCTSPEASPSSVT
250 260 270 280 290 300
pF1KB8 S
:
NP_002 S
>>NP_005513 (OMIM: 142955,601536) homeobox protein Hox-A (335 aa)
initn: 623 init1: 386 opt: 627 Z-score: 376.9 bits: 77.9 E(85289): 3e-14
Smith-Waterman score: 733; 44.5% identity (66.2% similar) in 337 aa overlap (1-301:1-328)
10 20 30 40 50
pF1KB8 MDYNRMNSFLEYPLCNRGPSAY-SAHSAP-----TSFPPSSAQAVDSYASEGRY--GGG-
:: :::::::::. . : :. ::.. : :.: : : ...: ... :. : :
NP_005 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQ-SCAVSANSCGGDDRFLVGRGV
10 20 30 40 50
60 70 80 90 100
pF1KB8 -LSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSG--YAPAACSPSYG------PSQYYPLG
..:: ... . :: . . .:. : :. ..:.:::: : . : :.
NP_005 QIGSPHHHHHHHHHHPQPAT-----YQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALN
60 70 80 90 100 110
110 120 130 140 150
pF1KB8 QSEGD--GGYFH--PSSYGAQLGG-------LSDGYGAGGAGPGPYPPQHPPYGNEQTAS
: :.: ::: . :. :...:.. .::..:..: : : ::.:. .
NP_005 Q-EADVSGGYPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYI--HHSYGQEHQSL
120 130 140 150 160 170
160 170 180 190 200
pF1KB8 FAPAYADLLSE---DKETPC--PSEPNTPTARTFDWMKVKRNPPKTAKVSEPG-LGSPSG
.: . :: ... : :. .. :.::::::::::::::.::.: : ::.:..
NP_005 ALATYNNSLSPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNA
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB8 LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREG
.::::::.:::::::::::::::.:::::::::.:.:::::::::::::::::::::.::
NP_005 VRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEG
240 250 260 270 280 290
270 280 290 300
pF1KB8 GR-VPPAPPGCPKEAAGDASDQSTCTSPEASPSSVTS
. :: : : : ..:..:. . ::.: ::
NP_005 LLPISPATPPGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH
300 310 320 330
>>NP_078777 (OMIM: 142987) homeobox protein Hox-D1 [Homo (328 aa)
initn: 427 init1: 352 opt: 538 Z-score: 326.9 bits: 68.7 E(85289): 1.8e-11
Smith-Waterman score: 560; 41.9% identity (58.7% similar) in 315 aa overlap (6-276:1-305)
10 20 30 40 50
pF1KB8 MDYNRMNSFLEYPLCNR-GPSAYSAHSAPTSFPPSSAQAVD-SYASEGRYGGGLSSPAFQ
:.:.::: :. : . .. : .: :.:. : . : : : .
NP_078 MSSYLEYVSCSSSGGVGGDVLSLAPKFCRSDARPVALQPAFPLGNGDGAFVSCLP
10 20 30 40 50
60 70 80 90
pF1KB8 QNSGYPAQQPPSTLGVPF--PSSAPS------------GYAPAACS--PSYG-----PSQ
.. :. .::.. . : : .::. : :::: . .:: :.
NP_078 LAAARPSPSPPAAPARPSVPPPAAPQYAQCTLEGAYEPGAAPAAAAGGADYGFLGSGPAY
60 70 80 90 100 110
100 110 120 130 140
pF1KB8 YYP--LGQSEGDGG-YFHPSSYGAQLGG---LSDG---YGAGGAGPGPYPP-------QH
.: ::.. ::: . : .. .. :: : .: :.: : :::.: :
NP_078 DFPGVLGRAADDGGSHVHYATSAVFSGGGSFLLSGQVDYAAFGE-PGPFPACLKASADGH
120 130 140 150 160 170
150 160 170 180 190 200
pF1KB8 PPYGNEQTASFAPA-YADLLSEDKETPCPSEPNTPTARTFDWMKVKRNPPKTAKVSEPGL
: : :::: ::. : .: : . : . . ::.::::::: : .:..: :
NP_078 P--GAFQTASPAPGTYPKSVS-----PASGLPAAFS--TFEWMKVKRNASKKGKLAEYGA
180 190 200 210 220
210 220 230 240 250
pF1KB8 GSPSG-LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQK
.:::. .::::.:.:::::::::::::::.::::.::: :.::.:::::::::::::::
NP_078 ASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQK
230 240 250 260 270 280
260 270 280 290 300
pF1KB8 KREREG---GRVPPAPPGCPKEAAGDASDQSTCTSPEASPSSVTS
:::::: .: :: :
NP_078 KREREGLLATAIPVAPLQLPLSGTTPTKFIKNPGSPSQSQEPS
290 300 310 320
>>NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [Homo (356 aa)
initn: 388 init1: 289 opt: 377 Z-score: 235.9 bits: 51.9 E(85289): 2.1e-06
Smith-Waterman score: 377; 43.6% identity (58.2% similar) in 165 aa overlap (133-296:75-232)
110 120 130 140 150 160
pF1KB8 QSEGDGGYFHPSSYGAQLGGLSDGYGAGGAGPGPYPPQHPPYGNEQTASFAPAYADLLSE
::. :: :: : : . . :
NP_002 PPPPFEQTFPSLQPGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSA
50 60 70 80 90 100
170 180 190 200 210 220
pF1KB8 DKETPCPSEPNTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEF
: . . : .:.: . : .: . : : :. ::: .:. :: ::::::
NP_002 KKPSQSATSP-SPAASAVPASGVG-SPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEF
110 120 130 140 150 160
230 240 250 260 270 280
pF1KB8 HFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREGGRVPP-APPGCPKEAAG
:::::: : ::::::: :.:.: :::.::::::::.:.. .. : :: . :.:: :
NP_002 HFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQH--REPPDGEPACPG-ALE
170 180 190 200 210
290 300
pF1KB8 DASDQSTCTSPEASPSSVTS
: : . : :::
NP_002 DICDPAE--EPAASPGGPSASRAAWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGC
220 230 240 250 260 270
>>NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [Homo (320 aa)
initn: 339 init1: 261 opt: 367 Z-score: 230.8 bits: 50.9 E(85289): 4e-06
Smith-Waterman score: 397; 34.4% identity (51.3% similar) in 308 aa overlap (31-300:17-314)
10 20 30 40 50
pF1KB8 MDYNRMNSFLEYPLCNRGPSAYSAHSAPTSFPP--SSAQAVDSYASEGRYGGGLSSPAFQ
::: :: : ...: ::: :..:
NP_002 MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGG---PGYQ
10 20 30 40
60 70 80 90 100
pF1KB8 Q-----NSGYPAQQP--PSTLGVPFPSS---APS-----GYAPAACSPSYGPSQY-YPLG
: .. : ::: : . : :.. :: .: :: :..: .. :: :
NP_002 QPPAPPTQHLPLQQPQLPHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYG
50 60 70 80 90 100
110 120 130 140 150
pF1KB8 QSEG--DGGYFHPSSYGAQLGGLSDGYGAGGA-GPGPYPPQHP---PYGNEQTASFAPAY
: : .: . :: : . : :. . : :: .: : . . :::
NP_002 YRGGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPAT
110 120 130 140 150 160
160 170 180 190 200
pF1KB8 ADLLSEDKETPCPS--EPNTPTAR------TFDWMKVKRNPPKTAKVSEPGLGSPSGLRT
. . . :: ..: . .. :: :. .... : : : :. ::
NP_002 PGVPAGGSAPACPLLLADKSPLGLKGKEPVVYPWM--KKIHVSAVNPSYNG-GEPKRSRT
170 180 190 200 210 220
210 220 230 240 250 260
pF1KB8 NFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER-----
.: .:. :::::::::.::.: ::.::: :: :.: :::::::::::: :: ..
NP_002 AYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTK
230 240 250 260 270 280
270 280 290 300
pF1KB8 -EGGRVPPAPPGCPKEAAGDASDQSTCTSPEASPSSVTS
... : : : : :. :: :. ::. :
NP_002 MRSSNSASASAGPP----GKAQTQSPHLHPHPHPSTSTPVPSSI
290 300 310 320
>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo (270 aa)
initn: 294 init1: 251 opt: 363 Z-score: 229.5 bits: 50.3 E(85289): 4.8e-06
Smith-Waterman score: 367; 33.1% identity (59.1% similar) in 269 aa overlap (6-263:1-255)
10 20 30 40 50
pF1KB8 MDYNRMNSFLEYPLCNRGPSA--YSAHSAPTSFPPSSAQAVDSYASE-GRYG---GGLSS
:.:.. .:.: :.. :. :. . : : :: . . :::: .:..
NP_061 MSSYFVNSFCGRYPNGPDYQLHNYG-DHSSVSEQFRDSASMHSGRYGYGYNGMDL
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 PAFQQNSGYPAQQPPSTLGVPFPSSAPSG--YAPAACSPSYGPSQYYPLGQSEGDGGYFH
. ...::. .. . . :.::. :. : : ...: : :: : .
NP_061 SVGRSGSGHFGSGERARSYAASASAAPAEPRYSQPATS-THSP-QPDPLPCSAVAPSPGS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 PSSYGAQLGGLSDGYGAGGAGPGPYPPQHPPYGNEQTASF-APAYADLLSEDKETPCPSE
: .:.. ..::.. ::.. . . . .. :. . : ::: .. : ..: : :.
NP_061 DSHHGGK-NSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSE-PSPAP
120 130 140 150 160 170
180 190 200 210 220
pF1KB8 PNTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSG--LRTNFTTRQLTELEKEFHFNKYLS
: : . . :: . ..:. ..:.: : :: .: : :::::::::.::.
NP_061 PAQP--QIYPWM-------RKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLT
180 190 200 210 220
230 240 250 260 270 280
pF1KB8 RARRVEIAATLELNETQVKIWFQNRRMKQKKREREGGRVPPAPPGCPKEAAGDASDQSTC
: ::.::: .: :.: :.:::::::::: :: ..
NP_061 RRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
230 240 250 260 270
290 300
pF1KB8 TSPEASPSSVTS
>>NP_001795 (OMIM: 600746) homeobox protein CDX-1 [Homo (265 aa)
initn: 266 init1: 190 opt: 349 Z-score: 221.7 bits: 48.9 E(85289): 1.3e-05
Smith-Waterman score: 349; 32.3% identity (57.8% similar) in 223 aa overlap (63-273:14-226)
40 50 60 70 80 90
pF1KB8 PSSAQAVDSYASEGRYGGGLSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSGYAPAACSPS
::. :..::. .:..:.: : :
NP_001 MYVGYVLDKDSPVYPGPARPASLGL-----GPQAYGPPA--PP
10 20 30
100 110 120 130 140
pF1KB8 YGPSQYYPLGQ-SEGDGGYFHPSSYGAQLGGLSDGYGAGGAGPGPYPPQHPP----YGNE
.: :: ... :. . . :...:: . . .: ..:. :::: : : .:
NP_001 PAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAA-YGPGPAAPAASPASLAFGPP
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB8 QTASFAPAYAD----LLSEDKETP-CPSEPNTPTARTFDWMKVKRNPPKTAKVSEPGLGS
: .:: ::.. : :: :.. ..::. :. . . .
NP_001 PDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMR--RSVAAGGGGGSGKTRT
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB8 PSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKK--
. :. .: .: :::::::...:.. :. :.::.: :.: :::::::::: :..:
NP_001 KDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVN
160 170 180 190 200 210
270 280 290 300
pF1KB8 REREGGRVPPAPPGCPKEAAGDASDQSTCTSPEASPSSVTS
.... . :: ::
NP_001 KKKQQQQQPPQPPMAHDITATPAGPSLGGLCPSNTSLLATSSPMPVKEEFLP
220 230 240 250 260
>>NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [Homo (255 aa)
initn: 322 init1: 260 opt: 344 Z-score: 219.1 bits: 48.3 E(85289): 1.8e-05
Smith-Waterman score: 394; 34.6% identity (53.4% similar) in 283 aa overlap (20-297:4-238)
10 20 30 40 50
pF1KB8 MDYNRMNSFLEYPLCNRGPSAYSAHS--APTSFPPSSAQAVDSYASE---GRYGGGLSSP
:.: ..: . .::: .: .: :::: ..
NP_055 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGA
10 20 30 40
60 70 80 90 100 110
pF1KB8 AFQQNSGYPAQQPPSTLGVPFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSS
:: . :: :. :: .:.:. :.. :. : .: . : ::.
NP_055 DFQPPGLYPR---PDFGEQPFGGSGPG---PGSALPARGHGQ-----EPGGPGGH-----
50 60 70 80
120 130 140 150 160 170
pF1KB8 YGAQLGGLSDGYGAGGAGPGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPNTP
:.: : : : :: :: : . : : :. :. : . . :
NP_055 -----------YAAPGE-PCPAPPAPPP------APLPGARAYSQSDPKQPPSGTALKQP
90 100 110 120 130
180 190 200 210 220 230
pF1KB8 TARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVE
: .. :: :. .... . : : :. :: .: .:. :::::::::.::.: ::.:
NP_055 -AVVYPWM--KKVHVNSVNPNYTG-GEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIE
140 150 160 170 180
240 250 260 270 280 290
pF1KB8 IAATLELNETQVKIWFQNRRMKQKKREREGGRVPPAPPGCPKEAAGDASDQSTCTSPEAS
:: :: :.: :.:::::::::: :: .. : : ....:..:.:.: :
NP_055 IAHTLCLSERQIKIWFQNRRMKWKKDHKL-----PNTKG----RSSSSSSSSSCSSSVA-
190 200 210 220 230
300
pF1KB8 PSSVTS
::
NP_055 PSQHLQPMAKDHHTDLTTL
240 250
>>XP_005246566 (OMIM: 142980) PREDICTED: homeobox protei (432 aa)
initn: 461 init1: 265 opt: 346 Z-score: 217.5 bits: 48.8 E(85289): 2.2e-05
Smith-Waterman score: 391; 34.8% identity (56.1% similar) in 253 aa overlap (31-266:12-257)
10 20 30 40 50
pF1KB8 MDYNRMNSFLEYPLCNRGPSAYSAHSAPTSFPPSSAQAVDSYASEGRYGG-GLSSPAFQQ
.: . : . : . : .:: : :. . .
XP_005 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTT--D
10 20 30
60 70 80 90 100 110
pF1KB8 NSGYPAQQPPSTLGVPFPSSAPS---GYAPAACS-PSYGPSQYYPLGQSEGDGGYFHPSS
. :: . . : : :..: : : .::: : .: . .: .:. ..:..
XP_005 TYGYSTPHQP----YPPPAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGT
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB8 YGAQLGGL-SDGYGAGGAGPGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPN-
..: :: :. : .. : :: :: .. . :. . .. : : : .
XP_005 GNSQGGGGGSQPPGLNSEQQPPQPPPPPPTLPPSSPT-NPGGGVPAKKPKGGPNASSSSA
100 110 120 130 140 150
180 190 200 210 220
pF1KB8 TPTARTFDWMKVKR-NPPKTAKVSEPGLG----SPSG-----LRTNFTTRQLTELEKEFH
: . . : ::: .: : . . . : . :: : .:: .:. ::.:::::::
XP_005 TISKQIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFH
160 170 180 190 200 210
230 240 250 260 270 280
pF1KB8 FNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREGGRVPPAPPGCPKEAAGDA
::.:: : ::::.: :.:.: :.:::::::::: :: .. :
XP_005 FNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLG
220 230 240 250 260 270
290 300
pF1KB8 SDQSTCTSPEASPSSVTS
XP_005 GAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEF
280 290 300 310 320 330
>>XP_011509368 (OMIM: 142980) PREDICTED: homeobox protei (432 aa)
initn: 461 init1: 265 opt: 346 Z-score: 217.5 bits: 48.8 E(85289): 2.2e-05
Smith-Waterman score: 391; 34.8% identity (56.1% similar) in 253 aa overlap (31-266:12-257)
10 20 30 40 50
pF1KB8 MDYNRMNSFLEYPLCNRGPSAYSAHSAPTSFPPSSAQAVDSYASEGRYGG-GLSSPAFQQ
.: . : . : . : .:: : :. . .
XP_011 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTT--D
10 20 30
60 70 80 90 100 110
pF1KB8 NSGYPAQQPPSTLGVPFPSSAPS---GYAPAACS-PSYGPSQYYPLGQSEGDGGYFHPSS
. :: . . : : :..: : : .::: : .: . .: .:. ..:..
XP_011 TYGYSTPHQP----YPPPAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGT
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB8 YGAQLGGL-SDGYGAGGAGPGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPN-
..: :: :. : .. : :: :: .. . :. . .. : : : .
XP_011 GNSQGGGGGSQPPGLNSEQQPPQPPPPPPTLPPSSPT-NPGGGVPAKKPKGGPNASSSSA
100 110 120 130 140 150
180 190 200 210 220
pF1KB8 TPTARTFDWMKVKR-NPPKTAKVSEPGLG----SPSG-----LRTNFTTRQLTELEKEFH
: . . : ::: .: : . . . : . :: : .:: .:. ::.:::::::
XP_011 TISKQIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFH
160 170 180 190 200 210
230 240 250 260 270 280
pF1KB8 FNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREGGRVPPAPPGCPKEAAGDA
::.:: : ::::.: :.:.: :.:::::::::: :: .. :
XP_011 FNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLG
220 230 240 250 260 270
290 300
pF1KB8 SDQSTCTSPEASPSSVTS
XP_011 GAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEF
280 290 300 310 320 330
301 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 04:22:10 2016 done: Tue Nov 8 04:22:12 2016
Total Scan time: 9.460 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]