FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8941, 301 aa 1>>>pF1KB8941 301 - 301 aa - 301 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.7084+/-0.000849; mu= 3.6585+/- 0.052 mean_var=303.6330+/-62.267, 0's: 0 Z-trim(117.1): 131 B-trim: 0 in 0/53 Lambda= 0.073604 statistics sampled from 17702 (17845) to 17702 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.548), width: 16 Scan time: 2.710 The best scores are: opt bits E(32554) CCDS32675.1 HOXB1 gene_id:3211|Hs108|chr17 ( 301) 2090 234.4 7.9e-62 CCDS5401.1 HOXA1 gene_id:3198|Hs108|chr7 ( 335) 627 79.1 4.9e-15 CCDS2271.1 HOXD1 gene_id:3231|Hs108|chr2 ( 328) 538 69.7 3.4e-12 >>CCDS32675.1 HOXB1 gene_id:3211|Hs108|chr17 (301 aa) initn: 2090 init1: 2090 opt: 2090 Z-score: 1223.5 bits: 234.4 E(32554): 7.9e-62 Smith-Waterman score: 2090; 99.7% identity (99.7% similar) in 301 aa overlap (1-301:1-301) 10 20 30 40 50 60 pF1KB8 MDYNRMNSFLEYPLCNRGPSAYSAHSAPTSFPPSSAQAVDSYASEGRYGGGLSSPAFQQN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MDYNRMNSFLEYPLCNRGPSAYSAHSAPTSFPPSSAQAVDSYASEGRYGGGLSSPAFQQN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 SGYPAQQPPSTLGVPFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 SGYPAQQPPSTLGVPFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 GGLSDGYGAGGAGPGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPNTPTARTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 GGLSDGYGAGGAGPGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPNTPTARTF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 DWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 DWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 ELNETQVKIWFQNRRMKQKKREREGGRVPPAPPGCPKEAAGDASDQSTCTSPEASPSSVT :::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::: CCDS32 ELNETQVKIWFQNRRMKQKKREREEGRVPPAPPGCPKEAAGDASDQSTCTSPEASPSSVT 250 260 270 280 290 300 pF1KB8 S : CCDS32 S >>CCDS5401.1 HOXA1 gene_id:3198|Hs108|chr7 (335 aa) initn: 623 init1: 386 opt: 627 Z-score: 383.4 bits: 79.1 E(32554): 4.9e-15 Smith-Waterman score: 732; 44.5% identity (66.2% similar) in 337 aa overlap (1-301:1-328) 10 20 30 40 50 pF1KB8 MDYNRMNSFLEYPLCNRGPSAY-SAHSAP-----TSFPPSSAQAVDSYASEGRY--GGG- :: :::::::::. . : :. ::.. : :.: : : ...: ... :. : : CCDS54 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQ-SCAVSANSCGGDDRFLVGRGV 10 20 30 40 50 60 70 80 90 100 pF1KB8 -LSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSG--YAPAACSPSYG------PSQYYPLG ..:: ... . :: . . .:. : :. ..:.:::: : . : :. CCDS54 QIGSPHHHHHHHHRHPQPAT-----YQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALN 60 70 80 90 100 110 110 120 130 140 150 pF1KB8 QSEGD--GGYFH--PSSYGAQLGG-------LSDGYGAGGAGPGPYPPQHPPYGNEQTAS : :.: ::: . :. :...:.. .::..:..: : : ::.:. . CCDS54 Q-EADVSGGYPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYI--HHSYGQEHQSL 120 130 140 150 160 170 160 170 180 190 200 pF1KB8 FAPAYADLLSE---DKETPC--PSEPNTPTARTFDWMKVKRNPPKTAKVSEPG-LGSPSG .: . :: ... : :. .. :.::::::::::::::.::.: : ::.:.. CCDS54 ALATYNNSLSPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNA 180 190 200 210 220 230 210 220 230 240 250 260 pF1KB8 LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREG .::::::.:::::::::::::::.:::::::::.:.:::::::::::::::::::::.:: CCDS54 VRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEG 240 250 260 270 280 290 270 280 290 300 pF1KB8 GR-VPPAPPGCPKEAAGDASDQSTCTSPEASPSSVTS . :: : : : ..:..:. . ::.: :: CCDS54 LLPISPATPPGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH 300 310 320 330 >>CCDS2271.1 HOXD1 gene_id:3231|Hs108|chr2 (328 aa) initn: 427 init1: 352 opt: 538 Z-score: 332.4 bits: 69.7 E(32554): 3.4e-12 Smith-Waterman score: 560; 41.9% identity (58.7% similar) in 315 aa overlap (6-276:1-305) 10 20 30 40 50 pF1KB8 MDYNRMNSFLEYPLCNR-GPSAYSAHSAPTSFPPSSAQAVD-SYASEGRYGGGLSSPAFQ :.:.::: :. : . .. : .: :.:. : . : : : . CCDS22 MSSYLEYVSCSSSGGVGGDVLSLAPKFCRSDARPVALQPAFPLGNGDGAFVSCLP 10 20 30 40 50 60 70 80 90 pF1KB8 QNSGYPAQQPPSTLGVPF--PSSAPS------------GYAPAACS--PSYG-----PSQ .. :. .::.. . : : .::. : :::: . .:: :. CCDS22 LAAARPSPSPPAAPARPSVPPPAAPQYAQCTLEGAYEPGAAPAAAAGGADYGFLGSGPAY 60 70 80 90 100 110 100 110 120 130 140 pF1KB8 YYP--LGQSEGDGG-YFHPSSYGAQLGG---LSDG---YGAGGAGPGPYPP-------QH .: ::.. ::: . : .. .. :: : .: :.: : :::.: : CCDS22 DFPGVLGRAADDGGSHVHYATSAVFSGGGSFLLSGQVDYAAFGE-PGPFPACLKASADGH 120 130 140 150 160 170 150 160 170 180 190 200 pF1KB8 PPYGNEQTASFAPA-YADLLSEDKETPCPSEPNTPTARTFDWMKVKRNPPKTAKVSEPGL : : :::: ::. : .: : . : . . ::.::::::: : .:..: : CCDS22 P--GAFQTASPAPGTYPKSVS-----PASGLPAAFS--TFEWMKVKRNASKKGKLAEYGA 180 190 200 210 220 210 220 230 240 250 pF1KB8 GSPSG-LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQK .:::. .::::.:.:::::::::::::::.::::.::: :.::.::::::::::::::: CCDS22 ASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQK 230 240 250 260 270 280 260 270 280 290 300 pF1KB8 KREREG---GRVPPAPPGCPKEAAGDASDQSTCTSPEASPSSVTS :::::: .: :: : CCDS22 KREREGLLATAIPVAPLQLPLSGTTPTKFIKNPGSPSQSQEPS 290 300 310 320 301 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:22:10 2016 done: Tue Nov 8 04:22:10 2016 Total Scan time: 2.710 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]