(Circular) (Six-base) MAPSORT of: pFN21AE3277.seq Check: 8313 from: 1 to: 6781 pFN21AE3277 6781 bp With 182 enzymes: SgfI * July 6, 2012 17:41 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 3334 3457 3334 Size: 123 6658 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 4591 278 Size: 53 83 186 936 3055 2468 Fragments arranged by size: 3055 2468 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2716 4124 1937 Size: 779 1408 4594 Fragments arranged by size: 4594 1408 779 Acc65I G'GTAC_C Cuts at: 2498 4102 2498 Size: 1604 5177 AclI AA'CG_TT Cuts at: 1563 4908 5281 1563 Size: 3345 373 3063 Fragments arranged by size: 3345 3063 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2663 4844 6228 6496 1632 Size: 1031 2181 1384 268 1917 Fragments arranged by size: 2181 1917 1384 1031 268 AfeI AGC'GCT Cuts at: 2288 2288 Size: 6781 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 6584 AflIII A'CryG_T Cuts at: 1203 5680 6657 1203 Size: 4477 977 1327 Fragments arranged by size: 4477 1327 977 AgeI A'CCGG_T Cuts at: 2679 5612 2679 Size: 2933 3848 AhdI GACnn_n'nnGTC Cuts at: 5510 5510 Size: 6781 AleI CACnn'nnGTG Cuts at: 1166 2492 2807 3002 3311 1166 Size: 1326 315 195 309 4636 Fragments arranged by size: 4636 1326 315 309 195 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2993 1184 Size: 1809 4972 AlwNI CAG_nnn'CTG Cuts at: 2089 2341 3728 4524 6096 2089 Size: 252 1387 796 1572 2774 Fragments arranged by size: 2774 1572 1387 796 252 ApaI G_GGCC'C Cuts at: 2569 2569 Size: 6781 ApaLI G'TGCA_C Cuts at: 2057 2360 4838 5994 2057 Size: 303 2478 1156 2844 Fragments arranged by size: 2844 2478 1156 303 ApoI r'AATT_y Cuts at: 1493 4090 4316 4468 6577 1493 Size: 2597 226 152 2109 1697 Fragments arranged by size: 2597 2109 1697 226 152 AseI AT'TA_AT Cuts at: 160 1032 5335 160 Size: 872 4303 1606 Fragments arranged by size: 4303 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 6781 AvaI C'yCGr_G Cuts at: 1870 1943 2901 3739 4106 1870 Size: 73 958 838 367 4545 Fragments arranged by size: 4545 958 838 367 73 AvrII C'CTAG_G Cuts at: 3085 3271 3085 Size: 186 6595 BamHI G'GATC_C Cuts at: 2022 4111 4478 2022 Size: 2089 367 4325 Fragments arranged by size: 4325 2089 367 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2042 2498 2657 2969 3267 Size: 325 217 627 255 456 159 312 298 Cuts at: 3267 3437 3469 3785 3811 4102 5557 618 Size: 170 32 316 26 291 1455 1842 Fragments arranged by size: 1842 1455 627 456 325 316 312 298 291 255 217 170 159 32 26 BanII G_rGCy'C Cuts at: 1391 2569 4100 1391 Size: 1178 1531 4072 Fragments arranged by size: 4072 1531 1178 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2226 928 Size: 971 327 5483 Fragments arranged by size: 5483 971 327 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 4972 5006 1903 Size: 34 3035 34 3678 Fragments arranged by size: 3678 3035 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2906 4673 5883 2906 Size: 1767 1210 3804 Fragments arranged by size: 3804 1767 1210 BclI T'GATC_A Cuts at: 1548 2094 1548 Size: 546 6235 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3356 3837 5392 Size: 107 122 71 631 605 1684 481 1555 Cuts at: 5392 136 Size: 1525 Fragments arranged by size: 1684 1555 1525 631 605 481 122 107 71 BglII A'GATC_T Cuts at: 6776 6776 Size: 6781 BlpI GC'TnA_GC Cuts at: 3495 4198 3495 Size: 703 6078 Bme1580I G_kGCm'C Cuts at: 1790 2061 2364 2569 2788 2972 3474 3713 3788 Size: 271 303 205 219 184 502 239 75 Cuts at: 3788 3814 4842 5998 1790 Size: 26 1028 1156 2573 Fragments arranged by size: 2573 1156 1028 502 303 271 239 219 205 184 75 26 BmgBI CAC'GTC Cuts at: 1318 2809 1318 Size: 1491 5290 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3133 3437 4512 Size: 416 53 83 399 24 1716 304 1075 Cuts at: 4512 5470 442 Size: 958 1753 Fragments arranged by size: 1753 1716 1075 958 416 399 304 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 6781 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3122 3122 Size: 6781 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2324 2747 3179 5441 1239 Size: 1085 423 432 2262 2579 Fragments arranged by size: 2579 2262 1085 432 423 Bpu10I CC'TnA_GC Cuts at: 2465 2520 2691 3647 2465 Size: 55 171 956 5599 Fragments arranged by size: 5599 956 171 55 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2153 2375 2585 3854 4906 5771 6069 2153 Size: 222 210 1269 1052 865 298 2865 Fragments arranged by size: 2865 1269 1052 865 298 222 210 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2306 2379 5444 882 Size: 617 807 73 3065 2219 Fragments arranged by size: 3065 2219 807 617 73 BsaAI yAC'GTr Cuts at: 493 1204 3190 3367 4572 493 Size: 711 1986 177 1205 2702 Fragments arranged by size: 2702 1986 1205 711 177 BsaBI GATnn'nnATC Cuts at: 6775 6775 Size: 6781 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3042 3058 4588 4970 Size: 53 83 186 936 1509 16 1530 382 Cuts at: 4970 5605 275 Size: 635 1451 Fragments arranged by size: 1530 1509 1451 936 635 382 186 83 53 16 BsaWI w'CCGG_w Cuts at: 2679 5214 5612 5886 6033 6444 2679 Size: 2535 398 274 147 411 3016 Fragments arranged by size: 3016 2535 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 3152 3182 3584 3614 1178 Size: 30 165 30 1749 30 402 30 4345 Fragments arranged by size: 4345 1749 402 165 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2321 2324 2780 3626 3653 1186 Size: 1135 3 456 846 27 4314 Fragments arranged by size: 4314 1135 846 456 27 3 BseYI C'CCAG_C Cuts at: 2736 2852 2965 3020 3325 3462 3583 5984 6480 Size: 116 113 55 305 137 121 2401 496 Cuts at: 6480 2736 Size: 3037 Fragments arranged by size: 3037 2401 496 305 137 121 116 113 55 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2306 2354 2363 3111 3362 3654 3998 Size: 573 570 48 9 748 251 292 344 Cuts at: 3998 1163 Size: 3946 Fragments arranged by size: 3946 748 573 570 344 292 251 48 9 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 4055 4231 4992 6020 1540 Size: 275 186 2054 176 761 1028 2301 Fragments arranged by size: 2301 2054 1028 761 275 186 176 BsiHKAI G_wGCw'C Cuts at: 2061 2364 4842 4927 5998 2061 Size: 303 2478 85 1071 2844 Fragments arranged by size: 2844 2478 1071 303 85 BsmI GAATG_Cn' Cuts at: 4292 4385 4292 Size: 93 6688 BsmBI CGTCTCn'nnnn_ Cuts at: 3065 3065 Size: 6781 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2061 2364 2569 2788 2972 3474 3713 Size: 399 271 303 205 219 184 502 239 Cuts at: 3713 3788 3814 4100 4842 4927 5998 1391 Size: 75 26 286 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 502 399 303 286 271 239 219 205 184 85 75 26 BspEI T'CCGG_A Cuts at: 6444 6444 Size: 6781 BspHI T'CATG_A Cuts at: 2649 3240 4670 6400 2649 Size: 591 1430 1730 3030 Fragments arranged by size: 3030 1730 1430 591 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 3334 3457 4136 844 Size: 2490 123 679 3489 Fragments arranged by size: 3489 2490 679 123 BsrBI CCG'CTC Cuts at: 1394 1823 2020 2137 4668 1394 Size: 429 197 117 2531 3507 Fragments arranged by size: 3507 2531 429 197 117 BsrDI GCAATG_nn' Cuts at: 65 1248 3268 3858 5276 5450 65 Size: 1183 2020 590 1418 174 1396 Fragments arranged by size: 2020 1418 1396 1183 590 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2679 3038 4069 5425 5612 1700 Size: 110 869 359 1031 1356 187 2869 Fragments arranged by size: 2869 1356 1031 869 359 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 6781 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 6781 BssSI C'ACGA_G Cuts at: 4841 5853 4841 Size: 1012 5769 BstAPI GCAn_nnn'nTGC Cuts at: 794 2341 2359 3267 794 Size: 1547 18 908 4308 Fragments arranged by size: 4308 1547 908 18 BstBI TT'CG_AA Cuts at: 5585 5585 Size: 6781 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 6781 BstXI CCAn_nnnn'nTGG Cuts at: 3313 3313 Size: 6781 BstYI r'GATC_y Cuts at: 1972 2022 2337 2460 4111 4478 4863 4880 6332 Size: 50 315 123 1651 367 385 17 1452 Cuts at: 6332 6418 6430 6776 1972 Size: 86 12 346 1977 Fragments arranged by size: 1977 1651 1452 385 367 346 315 123 86 50 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2241 2844 3277 3409 4027 513 Size: 552 939 237 603 433 132 618 3267 Fragments arranged by size: 3267 939 618 603 552 433 237 132 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 6042 Fragments arranged by size: 6042 683 56 BtsI GCAGTG_nn' Cuts at: 2348 2821 3126 3210 3711 4297 5091 5111 2348 Size: 473 305 84 501 586 794 20 4018 Fragments arranged by size: 4018 794 586 501 473 305 84 20 ClaI AT'CG_AT Cuts at: 1554 3516 1554 Size: 1962 4819 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 6746 DraI TTT'AAA Cuts at: 4085 4085 Size: 6781 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4015 5788 809 Size: 507 2699 1773 1802 Fragments arranged by size: 2699 1802 1773 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2592 2741 3544 Size: 54 1425 50 275 18 762 149 803 Cuts at: 3544 3971 4228 5117 6746 8 Size: 427 257 889 1629 43 Fragments arranged by size: 1629 1425 889 803 762 427 275 257 149 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 4228 1537 Size: 275 2416 4090 Fragments arranged by size: 4090 2416 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2127 2546 4711 1353 Size: 774 419 2165 3423 Fragments arranged by size: 3423 2165 774 419 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3111 5368 5742 5888 387 Size: 1064 138 1522 2257 374 146 1280 Fragments arranged by size: 2257 1522 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2324 2663 2747 3179 4844 5441 6228 Size: 393 692 339 84 432 1665 597 787 Cuts at: 6228 6496 1239 Size: 268 1524 Fragments arranged by size: 1665 1524 787 692 597 432 393 339 268 84 EcoNI CCTnn'n_nnAGG Cuts at: 2072 2303 3071 3608 3680 2072 Size: 231 768 537 72 5173 Fragments arranged by size: 5173 768 537 231 72 EcoO109I rG'GnC_Cy Cuts at: 2164 2566 2906 3076 3357 3643 2164 Size: 402 340 170 281 286 5302 Fragments arranged by size: 5302 402 340 286 281 170 EcoRI G'AATT_C Cuts at: 4090 4468 4090 Size: 378 6403 FspI TGC'GCA Cuts at: 5287 5287 Size: 6781 HaeII r_GCGC'y Cuts at: 1678 2290 5928 1678 Size: 612 3638 2531 Fragments arranged by size: 3638 2531 612 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3152 3184 3222 3254 3584 Size: 32 135 32 1580 32 38 32 330 Cuts at: 3584 3616 5422 5454 5496 5528 1373 Size: 32 1806 32 42 32 2626 Fragments arranged by size: 2626 1806 1580 330 135 42 38 32 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 4125 4371 669 Size: 988 281 2187 246 3079 Fragments arranged by size: 3079 2187 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 6781 HpaI GTT'AAC Cuts at: 4371 4371 Size: 6781 KpnI G_GTAC'C Cuts at: 2502 4106 2502 Size: 1604 5177 MfeI C'AATT_G Cuts at: 4380 4380 Size: 6781 MluI A'CGCG_T Cuts at: 6657 6657 Size: 6781 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 3963 5895 6079 1305 Size: 2658 1932 184 2007 Fragments arranged by size: 2658 2007 1932 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2594 3546 10 Size: 54 1425 343 762 952 3245 Fragments arranged by size: 3245 1425 952 762 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2187 2492 2807 3002 3239 3311 3845 Size: 648 1021 305 315 195 237 72 534 Cuts at: 3845 4739 5098 5257 518 Size: 894 359 159 2042 Fragments arranged by size: 2042 1021 894 648 534 359 315 305 237 195 159 72 MspA1I CmG'CkG Cuts at: 1606 2704 2740 2886 3020 3255 3420 3456 3725 Size: 1098 36 146 134 235 165 36 269 Cuts at: 3725 4197 4874 6022 6267 1606 Size: 472 677 1148 245 2120 Fragments arranged by size: 2120 1148 1098 677 472 269 245 235 165 146 134 36 36 NaeI GCC'GGC Cuts at: 3040 3040 Size: 6781 NcoI C'CATG_G Cuts at: 513 1065 2004 2241 3277 4027 513 Size: 552 939 237 1036 750 3267 Fragments arranged by size: 3267 1036 939 750 552 237 NdeI CA'TA_TG Cuts at: 387 387 Size: 6781 NgoMIV G'CCGG_C Cuts at: 3038 3038 Size: 6781 NheI G'CTAG_C Cuts at: 1052 1052 Size: 6781 NotI GC'GGCC_GC Cuts at: 4228 4228 Size: 6781 NspI r_CATG'y Cuts at: 1132 1229 2827 4139 5684 1132 Size: 97 1598 1312 1545 2229 Fragments arranged by size: 2229 1598 1545 1312 97 PasI CC'CwG_GG Cuts at: 1348 2569 3604 1348 Size: 1221 1035 4525 Fragments arranged by size: 4525 1221 1035 PciI A'CATG_T Cuts at: 5680 5680 Size: 6781 PflMI CCAn_nnn'nTGG Cuts at: 1108 2089 2761 3634 1108 Size: 981 672 873 4255 Fragments arranged by size: 4255 981 873 672 PfoI T'CCnGG_A Cuts at: 2214 3156 2214 Size: 942 5839 PmeI GTTT'AAAC Cuts at: 4085 4085 Size: 6781 PmlI CAC'GTG Cuts at: 3190 3367 3190 Size: 177 6604 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 4850 4882 6363 6395 4850 Size: 32 1481 32 5236 Fragments arranged by size: 5236 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2164 2906 2164 Size: 742 6039 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 6781 PsiI TTA'TAA Cuts at: 4351 4351 Size: 6781 PspOMI G'GGCC_C Cuts at: 2565 2565 Size: 6781 PstI C_TGCA'G Cuts at: 830 2891 4133 830 Size: 2061 1242 3478 Fragments arranged by size: 3478 2061 1242 PvuI CG_AT'CG Cuts at: 2001 4055 2001 Size: 2054 4727 PvuII CAG'CTG Cuts at: 2704 3020 3456 3725 2704 Size: 316 436 269 5760 Fragments arranged by size: 5760 436 316 269 SalI G'TCGA_C Cuts at: 1936 4123 1936 Size: 2187 4594 SapI GCTCTTCn'nnn_ Cuts at: 2127 2127 Size: 6781 SbfI CC_TGCA'GG Cuts at: 4133 4133 Size: 6781 ScaI AGT'ACT Cuts at: 2201 5029 6741 2201 Size: 2828 1712 2241 Fragments arranged by size: 2828 2241 1712 SfcI C'TryA_G Cuts at: 826 1045 2887 3879 4129 5264 5945 6136 826 Size: 219 1842 992 250 1135 681 191 1471 Fragments arranged by size: 1842 1471 1135 992 681 250 219 191 SfiI GGCCn_nnn'nGGCC Cuts at: 3356 3356 Size: 6781 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 6781 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 6781 SmaI CCC'GGG Cuts at: 1872 2903 4108 1872 Size: 1031 1205 4545 Fragments arranged by size: 4545 1205 1031 SmlI C'TyrA_G Cuts at: 820 1017 1943 2168 2390 2600 3833 4885 5786 Size: 197 926 225 222 210 1233 1052 901 Cuts at: 5786 6048 820 Size: 262 1553 Fragments arranged by size: 1553 1233 1052 926 901 262 225 222 210 197 SnaBI TAC'GTA Cuts at: 493 4572 493 Size: 4079 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 6781 SphI G_CATG'C Cuts at: 1132 2827 4139 1132 Size: 1695 1312 3774 Fragments arranged by size: 3774 1695 1312 SspI AAT'ATT Cuts at: 5 52 4705 5 Size: 47 4653 2081 Fragments arranged by size: 4653 2081 47 StuI AGG'CCT Cuts at: 1517 2483 3831 1517 Size: 966 1348 4467 Fragments arranged by size: 4467 1348 966 StyI C'CwwG_G Cuts at: 513 1065 2004 2127 2241 3085 3271 3277 3826 Size: 552 939 123 114 844 186 6 549 Cuts at: 3826 4027 4220 513 Size: 201 193 3074 Fragments arranged by size: 3074 939 844 552 549 201 193 186 123 114 6 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2381 3255 4045 4808 4825 4978 5163 Size: 1255 801 874 790 763 17 153 185 Cuts at: 5163 5608 325 Size: 445 1498 Fragments arranged by size: 1498 1255 874 801 790 763 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2199 3906 5027 Size: 274 80 33 51 1443 222 1707 1121 Cuts at: 5027 6739 96 Size: 1712 138 Fragments arranged by size: 1712 1707 1443 1121 274 222 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2863 2895 6741 6773 2863 Size: 32 3846 32 2871 Fragments arranged by size: 3846 2871 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 6781 XbaI T'CTAG_A Cuts at: 4117 4117 Size: 6781 XcmI CCAnnnn_n'nnnnTGG Cuts at: 3017 3187 3017 Size: 170 6611 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 6781 XmaI C'CCGG_G Cuts at: 1870 2901 4106 1870 Size: 1031 1205 4545 Fragments arranged by size: 4545 1205 1031 XmnI GAAnn'nnTTC Cuts at: 4910 4910 Size: 6781 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 4589 276 Size: 53 83 186 936 3055 2468 Fragments arranged by size: 3055 2468 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI AvrII BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PpuMI PshAI PsiI PspOMI PstI PvuI PvuII SalI SapI SbfI ScaI SfcI SfiI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AloI AscI BaeI BbeI BbvCI BfrBI BsiWI BstZ17I Bsu36I DraIII EcoICRI EcoRV FalI FseI FspAI KasI NarI NruI NsiI PacI PspXI PsrI RsrII SacI SacII SanDI SexAI SfoI SrfI SwaI