FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6564, 180 aa
  1>>>pF1KE6564 180 - 180 aa - 180 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0849+/-0.000319; mu= 13.6223+/- 0.020
 mean_var=61.2653+/-12.373, 0's: 0 Z-trim(116.2): 8  B-trim: 381 in 2/53
 Lambda= 0.163858
 statistics sampled from 27192 (27199) to 27192 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.319), width:  16
 Scan time:  3.760

The best scores are:                                      opt bits E(85289)
NP_000476 (OMIM: 102600,614723) adenine phosphorib ( 180) 1178 286.5 1.6e-77
NP_001025189 (OMIM: 102600,614723) adenine phospho ( 134)  879 215.7 2.4e-56


>>NP_000476 (OMIM: 102600,614723) adenine phosphoribosyl  (180 aa)
 initn: 1178 init1: 1178 opt: 1178  Z-score: 1512.8  bits: 286.5 E(85289): 1.6e-77
Smith-Waterman score: 1178; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KE6 MADSELQLVEQRIRSFPDFPTPGVVFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MADSELQLVEQRIRSFPDFPTPGVVFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 IAGLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IAGLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 QRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSLVELTSLKGREKLAPVPFFSLLQYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSLVELTSLKGREKLAPVPFFSLLQYE
              130       140       150       160       170       180

>>NP_001025189 (OMIM: 102600,614723) adenine phosphoribo  (134 aa)
 initn: 879 init1: 879 opt: 879  Z-score: 1132.7  bits: 215.7 E(85289): 2.4e-56
Smith-Waterman score: 879; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KE6 MADSELQLVEQRIRSFPDFPTPGVVFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADSELQLVEQRIRSFPDFPTPGVVFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 IAGLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IAGLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 QRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSLVELTSLKGREKLAPVPFFSLLQYE
       :::::::::::::                                               
NP_001 QRVVVVDDLLATGV                                              
              130                                                  




180 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:26:55 2016 done: Tue Nov  8 14:26:56 2016
 Total Scan time:  3.760 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]