FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6564, 180 aa
  1>>>pF1KE6564 180 - 180 aa - 180 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4900+/-0.000678; mu= 11.1760+/- 0.041
 mean_var=59.6179+/-11.947, 0's: 0 Z-trim(109.5): 13  B-trim: 0 in 0/51
 Lambda= 0.166106
 statistics sampled from 10910 (10913) to 10910 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.335), width:  16
 Scan time:  1.480

The best scores are:                                      opt bits E(32554)
CCDS32511.1 APRT gene_id:353|Hs108|chr16           ( 180) 1178 290.2 4.7e-79
CCDS45546.1 APRT gene_id:353|Hs108|chr16           ( 134)  879 218.5 1.3e-57


>>CCDS32511.1 APRT gene_id:353|Hs108|chr16                (180 aa)
 initn: 1178 init1: 1178 opt: 1178  Z-score: 1532.8  bits: 290.2 E(32554): 4.7e-79
Smith-Waterman score: 1178; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KE6 MADSELQLVEQRIRSFPDFPTPGVVFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MADSELQLVEQRIRSFPDFPTPGVVFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 IAGLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IAGLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 QRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSLVELTSLKGREKLAPVPFFSLLQYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSLVELTSLKGREKLAPVPFFSLLQYE
              130       140       150       160       170       180

>>CCDS45546.1 APRT gene_id:353|Hs108|chr16                (134 aa)
 initn: 879 init1: 879 opt: 879  Z-score: 1147.6  bits: 218.5 E(32554): 1.3e-57
Smith-Waterman score: 879; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KE6 MADSELQLVEQRIRSFPDFPTPGVVFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MADSELQLVEQRIRSFPDFPTPGVVFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 IAGLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IAGLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 QRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSLVELTSLKGREKLAPVPFFSLLQYE
       :::::::::::::                                               
CCDS45 QRVVVVDDLLATGV                                              
              130                                                  




180 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:26:55 2016 done: Tue Nov  8 14:26:55 2016
 Total Scan time:  1.480 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]