FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2509, 754 aa 1>>>pF1KE2509 754 - 754 aa - 754 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.5589+/- 0.001; mu= 9.5495+/- 0.060 mean_var=122.5162+/-25.418, 0's: 0 Z-trim(107.1): 52 B-trim: 87 in 1/50 Lambda= 0.115872 statistics sampled from 9322 (9360) to 9322 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.288), width: 16 Scan time: 3.860 The best scores are: opt bits E(32554) CCDS32467.1 LRRC36 gene_id:55282|Hs108|chr16 ( 754) 4908 832.2 0 CCDS58474.1 LRRC36 gene_id:55282|Hs108|chr16 ( 633) 4077 693.3 3.1e-199 CCDS34126.1 CEP72 gene_id:55722|Hs108|chr5 ( 647) 468 90.0 1.3e-17 >>CCDS32467.1 LRRC36 gene_id:55282|Hs108|chr16 (754 aa) initn: 4908 init1: 4908 opt: 4908 Z-score: 4440.0 bits: 832.2 E(32554): 0 Smith-Waterman score: 4908; 100.0% identity (100.0% similar) in 754 aa overlap (1-754:1-754) 10 20 30 40 50 60 pF1KE2 MAEQWELDEEGIRRLGALTLEQPELVESLSLQGSYAGKIHSIGDAFRNFKNLRSLDLSRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MAEQWELDEEGIRRLGALTLEQPELVESLSLQGSYAGKIHSIGDAFRNFKNLRSLDLSRN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LITSLKGIQYLCSLQDLNLYYNNIPSLVEVSRLQPLPFLKELDLRLNPVVRKDTDYRLFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 LITSLKGIQYLCSLQDLNLYYNNIPSLVEVSRLQPLPFLKELDLRLNPVVRKDTDYRLFA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 VYTLQTLEKLDDRTVREGERKAAKLHFSQLGNSENFLLEVEKSSREKTMKNCVTGESSAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 VYTLQTLEKLDDRTVREGERKAAKLHFSQLGNSENFLLEVEKSSREKTMKNCVTGESSAS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 KVSANVDSRIEMDSNKGLFIPFPNREIKDSLSTSATQGNGTRDQKLDTFPLGTQTQEVAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 KVSANVDSRIEMDSNKGLFIPFPNREIKDSLSTSATQGNGTRDQKLDTFPLGTQTQEVAR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 REMPSDNHQEDEFRHYSPRQSTVRSPEKMTREGYQVSFLDNKSSGSSPEKELIPKPDTFH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 REMPSDNHQEDEFRHYSPRQSTVRSPEKMTREGYQVSFLDNKSSGSSPEKELIPKPDTFH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 LTHDASLSKCLDVGDSSQIHPYQLPSDVGLENYDSCYSQTLSLHGSLGKRPQRSKNYQEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 LTHDASLSKCLDVGDSSQIHPYQLPSDVGLENYDSCYSQTLSLHGSLGKRPQRSKNYQEY 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 SIKPSNDIKTTASHSCGDLLTSLSNPDSSTGRLLKLSSDLYATTHFNSDPAVLVNVEQQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 SIKPSNDIKTTASHSCGDLLTSLSNPDSSTGRLLKLSSDLYATTHFNSDPAVLVNVEQQL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 STSLDDLTPAHGSVPNNAVLGNRTTPLRTLLLSPGTSEHRKIFTKRSLSPSKRGFKWKDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 STSLDDLTPAHGSVPNNAVLGNRTTPLRTLLLSPGTSEHRKIFTKRSLSPSKRGFKWKDN 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 ILANLNLKHGFQDATGSEPLSSDLGSLHGLAGNHSPPISARTPHVATVLRQLLELVDKHW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 ILANLNLKHGFQDATGSEPLSSDLGSLHGLAGNHSPPISARTPHVATVLRQLLELVDKHW 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE2 NGSGSLLLNKKFLGPARDLLLSLVVPAPSQPRCCSHPEDTMKAFCRRELELKEAAQLVPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 NGSGSLLLNKKFLGPARDLLLSLVVPAPSQPRCCSHPEDTMKAFCRRELELKEAAQLVPN 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE2 DMESLKQKLVRVLEENLILSEKIQQLEEGAAISIVSGQQSHTYDDLLHKNQQLTMQVACL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 DMESLKQKLVRVLEENLILSEKIQQLEEGAAISIVSGQQSHTYDDLLHKNQQLTMQVACL 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE2 NQELAQLKKLEKTVAILHESQRSLVVTNEYLLQQLNKEPKGYSGKALLPPEKGHHLGRSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 NQELAQLKKLEKTVAILHESQRSLVVTNEYLLQQLNKEPKGYSGKALLPPEKGHHLGRSS 670 680 690 700 710 720 730 740 750 pF1KE2 PFGKSTLSSSSPVAHETGQYLIQSVLDAAPEPGL :::::::::::::::::::::::::::::::::: CCDS32 PFGKSTLSSSSPVAHETGQYLIQSVLDAAPEPGL 730 740 750 >>CCDS58474.1 LRRC36 gene_id:55282|Hs108|chr16 (633 aa) initn: 4077 init1: 4077 opt: 4077 Z-score: 3690.4 bits: 693.3 E(32554): 3.1e-199 Smith-Waterman score: 4077; 100.0% identity (100.0% similar) in 624 aa overlap (131-754:10-633) 110 120 130 140 150 160 pF1KE2 ELDLRLNPVVRKDTDYRLFAVYTLQTLEKLDDRTVREGERKAAKLHFSQLGNSENFLLEV :::::::::::::::::::::::::::::: CCDS58 MLRPRFLPPDDRTVREGERKAAKLHFSQLGNSENFLLEV 10 20 30 170 180 190 200 210 220 pF1KE2 EKSSREKTMKNCVTGESSASKVSANVDSRIEMDSNKGLFIPFPNREIKDSLSTSATQGNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 EKSSREKTMKNCVTGESSASKVSANVDSRIEMDSNKGLFIPFPNREIKDSLSTSATQGNG 40 50 60 70 80 90 230 240 250 260 270 280 pF1KE2 TRDQKLDTFPLGTQTQEVARREMPSDNHQEDEFRHYSPRQSTVRSPEKMTREGYQVSFLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 TRDQKLDTFPLGTQTQEVARREMPSDNHQEDEFRHYSPRQSTVRSPEKMTREGYQVSFLD 100 110 120 130 140 150 290 300 310 320 330 340 pF1KE2 NKSSGSSPEKELIPKPDTFHLTHDASLSKCLDVGDSSQIHPYQLPSDVGLENYDSCYSQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 NKSSGSSPEKELIPKPDTFHLTHDASLSKCLDVGDSSQIHPYQLPSDVGLENYDSCYSQT 160 170 180 190 200 210 350 360 370 380 390 400 pF1KE2 LSLHGSLGKRPQRSKNYQEYSIKPSNDIKTTASHSCGDLLTSLSNPDSSTGRLLKLSSDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 LSLHGSLGKRPQRSKNYQEYSIKPSNDIKTTASHSCGDLLTSLSNPDSSTGRLLKLSSDL 220 230 240 250 260 270 410 420 430 440 450 460 pF1KE2 YATTHFNSDPAVLVNVEQQLSTSLDDLTPAHGSVPNNAVLGNRTTPLRTLLLSPGTSEHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 YATTHFNSDPAVLVNVEQQLSTSLDDLTPAHGSVPNNAVLGNRTTPLRTLLLSPGTSEHR 280 290 300 310 320 330 470 480 490 500 510 520 pF1KE2 KIFTKRSLSPSKRGFKWKDNILANLNLKHGFQDATGSEPLSSDLGSLHGLAGNHSPPISA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 KIFTKRSLSPSKRGFKWKDNILANLNLKHGFQDATGSEPLSSDLGSLHGLAGNHSPPISA 340 350 360 370 380 390 530 540 550 560 570 580 pF1KE2 RTPHVATVLRQLLELVDKHWNGSGSLLLNKKFLGPARDLLLSLVVPAPSQPRCCSHPEDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 RTPHVATVLRQLLELVDKHWNGSGSLLLNKKFLGPARDLLLSLVVPAPSQPRCCSHPEDT 400 410 420 430 440 450 590 600 610 620 630 640 pF1KE2 MKAFCRRELELKEAAQLVPNDMESLKQKLVRVLEENLILSEKIQQLEEGAAISIVSGQQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 MKAFCRRELELKEAAQLVPNDMESLKQKLVRVLEENLILSEKIQQLEEGAAISIVSGQQS 460 470 480 490 500 510 650 660 670 680 690 700 pF1KE2 HTYDDLLHKNQQLTMQVACLNQELAQLKKLEKTVAILHESQRSLVVTNEYLLQQLNKEPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 HTYDDLLHKNQQLTMQVACLNQELAQLKKLEKTVAILHESQRSLVVTNEYLLQQLNKEPK 520 530 540 550 560 570 710 720 730 740 750 pF1KE2 GYSGKALLPPEKGHHLGRSSPFGKSTLSSSSPVAHETGQYLIQSVLDAAPEPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 GYSGKALLPPEKGHHLGRSSPFGKSTLSSSSPVAHETGQYLIQSVLDAAPEPGL 580 590 600 610 620 630 >>CCDS34126.1 CEP72 gene_id:55722|Hs108|chr5 (647 aa) initn: 586 init1: 422 opt: 468 Z-score: 429.7 bits: 90.0 E(32554): 1.3e-17 Smith-Waterman score: 523; 27.6% identity (51.0% similar) in 724 aa overlap (7-697:10-608) 10 20 30 40 50 pF1KE2 MAEQWELDEEGIRRLGALTLEQPELVE--SLSLQGSYAGKIHSIGDAFRNFKNLRSL :.::..: ..: . .:.: :::. :.: :: .: .. .. .:.:: CCDS34 MARAGPRLVLSEEAVRAKSGLG-PHRDLAELQSLSIPGTYQEKITHLGHSLMSLTGLKSL 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 DLSRNLITSLKGIQYLCSLQDLNLYYNNIPSLVEVSRLQPLPFLKELDLRLNPVVRKDTD ::::: ..::.::::: .:..:::::: : ::.:: ::. : : ..:.::::::. . : CCDS34 DLSRNSLVSLEGIQYLTALESLNLYYNCISSLAEVFRLHALTELVDVDFRLNPVVKVEPD 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 YRLFAVYTLQTLEKLDDRTVREGERKAAKLHFSQLGNSENFLLEVEKSSREKTMKNCVTG ::::.:. : :..:::: :: .::::..:::. ::. : : : ..:. CCDS34 YRLFVVHLLPKLQQLDDRPVRASERKASRLHFA----SEDSLDS--KESVPASLKEGRPH 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE2 ESSASKVSANVDSRIEMDSNKGLFIPFPNREIKD----SLSTSATQGNGTRDQKLDTFPL . :. . : . . . ::.. . . . : ::: .: . :.. . CCDS34 HPRAKCTEALAKQSLVMDADDEAVLNLIAECEWDLGRPPGSTSFSQKGREADSRGSQESR 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE2 GTQTQEVARREMPSDNHQEDEFRHYSPRQSTVRSPEKMTREGYQVSFLDNKSSGSSPEKE . .... . ....: : :. : : . ::: :. :. :: CCDS34 HLLSPQLVQYQCGDSGKQGRETRRSSCRGCCL---EKMPWS--QLCGELPPLYGAEPEAS 240 250 260 270 280 300 310 320 330 340 pF1KE2 LIPKPDTFHLTHDASLSKCLDVGDSSQIHPYQLPSDVGLENYDSCYSQTLSLHGSL--GK :.: :. : :. .. :: :: :.: : . : CCDS34 RAPRPHTYFTPHPDSM-----------------------DTEDSASSQKLDLSGEMVPGP 290 300 310 320 350 360 370 380 390 400 pF1KE2 RPQRSKNYQEYSIKPSNDIKTTASHSCGDLLTSLSNPDSSTGRLLKLSSDLYATTHFNSD : .: .. : . ..: ... .:. :. :: .: CCDS34 LPAPGKCRKRRM--PVGRFQTFSDQE------GLGCPER---------------THGSSV 330 340 350 360 410 420 430 440 450 460 pF1KE2 PAVLVNVEQQLSTSLDDLTPAHGSVPNNAVLGNRTTPLRTLLLSPGTSEHRKIFTKRSLS : . : : .: . .... ::: .: .:: .. .:: CCDS34 P--------KESLSRQDSSESRNG--------------RTLS-QPEASETEE---QRS-- 370 380 390 470 480 490 500 510 520 pF1KE2 PSKRGFKWKDNILANLNLKHGFQDATGSEPLSSDLGSLHGLAGNHSPPISARTPHVATVL .: :. : :.:: . .: :..: CCDS34 -------------------RGVTDTREPSP------------GSHSALPGKKTALQAALL 400 410 420 530 540 550 560 570 580 pF1KE2 RQLLELVDKHWNGSGSLLLNKKFLGPARDLLLSLVVPAPSQPRCCSHPEDTMK-AFCRRE . ::.:::. :.: :: :. ::. :: .: :. . .: ::. . :. . CCDS34 ETLLDLVDRSWGGCRSLHSNEAFLAQARHILSSVEEFTAAQDSSAMVGEDVGSLALESKS 430 440 450 460 470 480 590 600 610 620 pF1KE2 LELKEAAQL----------------VPNDMESLKQKLVRVLEEN-----LILSEK--IQQ :. . : : . .....:.:.: . :::: :.:: : ... CCDS34 LQSRLAEQQQQHAREMSEVTAELHHTHKELDDLRQHLDKSLEENSRLKSLLLSMKKEVKS 490 500 510 520 530 540 630 640 650 660 670 680 pF1KE2 LEEGAAISI-VSGQQSHTYDDLLHKNQQLTMQVACLNQELAQLKKLEKTVAILHESQRSL . .:.... ..: :. . ..: ... :.:.: . :... . .:.::. :: CCDS34 ADTAATLNLQIAGLQTSV--------KRLCGEIVELKQHLEHYDKIQELTQMLQESHSSL 550 560 570 580 590 690 700 710 720 730 740 pF1KE2 VVTNEYLLQQLNKEPKGYSGKALLPPEKGHHLGRSSPFGKSTLSSSSPVAHETGQYLIQS : :::.:::.:.. CCDS34 VSTNEHLLQELSQVRAQHRAEVEQMHWSYQELKKTMALFPHSSASHGGCQAC 600 610 620 630 640 754 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 02:46:20 2016 done: Tue Nov 8 02:46:21 2016 Total Scan time: 3.860 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]