FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3680, 161 aa 1>>>pF1KE3680 161 - 161 aa - 161 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.3441+/-0.000282; mu= 1.2035+/- 0.018 mean_var=215.5857+/-43.863, 0's: 0 Z-trim(125.5): 13 B-trim: 367 in 1/59 Lambda= 0.087350 statistics sampled from 49221 (49234) to 49221 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.848), E-opt: 0.2 (0.577), width: 16 Scan time: 5.730 The best scores are: opt bits E(85289) XP_006721048 (OMIM: 601098,603795) PREDICTED: lipo ( 161) 1174 158.7 3.6e-39 XP_016879385 (OMIM: 601098,603795) PREDICTED: lipo ( 161) 1174 158.7 3.6e-39 XP_006721047 (OMIM: 601098,603795) PREDICTED: lipo ( 161) 1174 158.7 3.6e-39 NP_001129944 (OMIM: 601098,603795) lipopolysacchar ( 161) 1174 158.7 3.6e-39 NP_004853 (OMIM: 601098,603795) lipopolysaccharide ( 161) 1174 158.7 3.6e-39 XP_006721046 (OMIM: 601098,603795) PREDICTED: lipo ( 161) 1174 158.7 3.6e-39 XP_006721045 (OMIM: 601098,603795) PREDICTED: lipo ( 161) 1174 158.7 3.6e-39 XP_011521056 (OMIM: 601098,603795) PREDICTED: lipo ( 191) 1174 158.8 4.1e-39 NP_001129945 (OMIM: 601098,603795) lipopolysacchar ( 152) 900 124.2 8.6e-29 NP_001185983 (OMIM: 610503) cell death-inducing p5 ( 208) 349 54.9 8.7e-08 NP_037531 (OMIM: 610503) cell death-inducing p53-t ( 208) 349 54.9 8.7e-08 NP_001185985 (OMIM: 610503) cell death-inducing p5 ( 129) 315 50.4 1.2e-06 NP_001185984 (OMIM: 610503) cell death-inducing p5 ( 169) 312 50.1 1.9e-06 >>XP_006721048 (OMIM: 601098,603795) PREDICTED: lipopoly (161 aa) initn: 1174 init1: 1174 opt: 1174 Z-score: 824.2 bits: 158.7 E(85289): 3.6e-39 Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161) 10 20 30 40 50 60 pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG 70 80 90 100 110 120 130 140 150 160 pF1KE3 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL ::::::::::::::::::::::::::::::::::::::::: XP_006 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL 130 140 150 160 >>XP_016879385 (OMIM: 601098,603795) PREDICTED: lipopoly (161 aa) initn: 1174 init1: 1174 opt: 1174 Z-score: 824.2 bits: 158.7 E(85289): 3.6e-39 Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161) 10 20 30 40 50 60 pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG 70 80 90 100 110 120 130 140 150 160 pF1KE3 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL ::::::::::::::::::::::::::::::::::::::::: XP_016 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL 130 140 150 160 >>XP_006721047 (OMIM: 601098,603795) PREDICTED: lipopoly (161 aa) initn: 1174 init1: 1174 opt: 1174 Z-score: 824.2 bits: 158.7 E(85289): 3.6e-39 Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161) 10 20 30 40 50 60 pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG 70 80 90 100 110 120 130 140 150 160 pF1KE3 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL ::::::::::::::::::::::::::::::::::::::::: XP_006 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL 130 140 150 160 >>NP_001129944 (OMIM: 601098,603795) lipopolysaccharide- (161 aa) initn: 1174 init1: 1174 opt: 1174 Z-score: 824.2 bits: 158.7 E(85289): 3.6e-39 Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161) 10 20 30 40 50 60 pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG 70 80 90 100 110 120 130 140 150 160 pF1KE3 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL ::::::::::::::::::::::::::::::::::::::::: NP_001 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL 130 140 150 160 >>NP_004853 (OMIM: 601098,603795) lipopolysaccharide-ind (161 aa) initn: 1174 init1: 1174 opt: 1174 Z-score: 824.2 bits: 158.7 E(85289): 3.6e-39 Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161) 10 20 30 40 50 60 pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG 70 80 90 100 110 120 130 140 150 160 pF1KE3 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL ::::::::::::::::::::::::::::::::::::::::: NP_004 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL 130 140 150 160 >>XP_006721046 (OMIM: 601098,603795) PREDICTED: lipopoly (161 aa) initn: 1174 init1: 1174 opt: 1174 Z-score: 824.2 bits: 158.7 E(85289): 3.6e-39 Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161) 10 20 30 40 50 60 pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG 70 80 90 100 110 120 130 140 150 160 pF1KE3 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL ::::::::::::::::::::::::::::::::::::::::: XP_006 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL 130 140 150 160 >>XP_006721045 (OMIM: 601098,603795) PREDICTED: lipopoly (161 aa) initn: 1174 init1: 1174 opt: 1174 Z-score: 824.2 bits: 158.7 E(85289): 3.6e-39 Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161) 10 20 30 40 50 60 pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG 70 80 90 100 110 120 130 140 150 160 pF1KE3 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL ::::::::::::::::::::::::::::::::::::::::: XP_006 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL 130 140 150 160 >>XP_011521056 (OMIM: 601098,603795) PREDICTED: lipopoly (191 aa) initn: 1174 init1: 1174 opt: 1174 Z-score: 823.2 bits: 158.8 E(85289): 4.1e-39 Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:31-191) 10 20 30 pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVN :::::::::::::::::::::::::::::: XP_011 MTFVNCHGAGGSVAVRKTRVRPRRRLGFGKMSVPGPYQAATGPSSAPSAPPSYEETVAVN 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 SYYPTPPAPMPGPTTGLVTGPDGKGMNPPSYYTQPAPIPNNNPITVQTVYVQHPITFLDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SYYPTPPAPMPGPTTGLVTGPDGKGMNPPSYYTQPAPIPNNNPITVQTVYVQHPITFLDR 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 PIQMCCPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQDVDHYCPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PIQMCCPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQDVDHYCPN 130 140 150 160 170 180 160 pF1KE3 CRALLGTYKRL ::::::::::: XP_011 CRALLGTYKRL 190 >>NP_001129945 (OMIM: 601098,603795) lipopolysaccharide- (152 aa) initn: 900 init1: 900 opt: 900 Z-score: 637.9 bits: 124.2 E(85289): 8.6e-29 Smith-Waterman score: 900; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126) 10 20 30 40 50 60 pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG 70 80 90 100 110 120 130 140 150 160 pF1KE3 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL :::::: NP_001 SLCLLGQECSGTIVALRSFDLLGSCNPPSSAS 130 140 150 >>NP_001185983 (OMIM: 610503) cell death-inducing p53-ta (208 aa) initn: 315 init1: 260 opt: 349 Z-score: 260.8 bits: 54.9 E(85289): 8.7e-08 Smith-Waterman score: 349; 36.4% identity (58.0% similar) in 162 aa overlap (4-161:51-207) 10 20 30 pF1KE3 MSVPGPYQAATGPSSAPS-APP--SYEETVAVN : ::. : :. :: : . : NP_001 KSGAPPTPGRSSPAVMQPPPGMPLPPADIGPPPYEPPGHPMPQPGFIPPHMSADGTYMPP 30 40 50 60 70 80 40 50 60 70 80 pF1KE3 SYYPTPPAPMPGPTTGLVTGPDGKGMNP-PSYYTQPAPIPNNNPITVQTVYVQHPITFLD ..:: ::.: : : :: : : :. .: . .:.. :: :: .: : : NP_001 GFYP-PPGPHP-PMGYYPPGPYTPGPYPGPGGHTATVLVPSGAATTV-TV-LQGEI-FEG 90 100 110 120 130 90 100 110 120 130 140 pF1KE3 RPIQMCCPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQDVDHYCP :.: :: :.. :....::. : .... :..:: :::.:: .. ..:: : :: NP_001 APVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCP 140 150 160 170 180 190 150 160 pF1KE3 NCRALLGTYKRL .:.: . ::::: NP_001 SCKAYIYTYKRLC 200 161 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 12:20:11 2016 done: Sun Nov 6 12:20:11 2016 Total Scan time: 5.730 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]