FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3680, 161 aa 1>>>pF1KE3680 161 - 161 aa - 161 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.6941+/-0.00073; mu= 5.0926+/- 0.044 mean_var=204.1818+/-40.740, 0's: 0 Z-trim(118.0): 6 B-trim: 457 in 1/53 Lambda= 0.089756 statistics sampled from 18825 (18830) to 18825 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.853), E-opt: 0.2 (0.578), width: 16 Scan time: 2.110 The best scores are: opt bits E(32554) CCDS32386.1 LITAF gene_id:9516|Hs108|chr16 ( 161) 1174 162.6 9.6e-41 CCDS45411.1 LITAF gene_id:9516|Hs108|chr16 ( 152) 900 127.1 4.4e-30 >>CCDS32386.1 LITAF gene_id:9516|Hs108|chr16 (161 aa) initn: 1174 init1: 1174 opt: 1174 Z-score: 844.9 bits: 162.6 E(32554): 9.6e-41 Smith-Waterman score: 1174; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161) 10 20 30 40 50 60 pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG 70 80 90 100 110 120 130 140 150 160 pF1KE3 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL ::::::::::::::::::::::::::::::::::::::::: CCDS32 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL 130 140 150 160 >>CCDS45411.1 LITAF gene_id:9516|Hs108|chr16 (152 aa) initn: 900 init1: 900 opt: 900 Z-score: 653.5 bits: 127.1 E(32554): 4.4e-30 Smith-Waterman score: 900; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126) 10 20 30 40 50 60 pF1KE3 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG 70 80 90 100 110 120 130 140 150 160 pF1KE3 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL :::::: CCDS45 SLCLLGQECSGTIVALRSFDLLGSCNPPSSAS 130 140 150 161 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 12:20:10 2016 done: Sun Nov 6 12:20:10 2016 Total Scan time: 2.110 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]