FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2268, 128 aa 1>>>pF1KE2268 128 - 128 aa - 128 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6193+/-0.000287; mu= 14.2229+/- 0.018 mean_var=59.3994+/-12.339, 0's: 0 Z-trim(117.3): 12 B-trim: 0 in 0/56 Lambda= 0.166411 statistics sampled from 29263 (29274) to 29263 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.343), width: 16 Scan time: 4.890 The best scores are: opt bits E(85289) NP_004909 (OMIM: 603769) T-cell leukemia/lymphoma ( 128) 889 221.0 4.1e-58 XP_016877166 (OMIM: 186960) PREDICTED: T-cell leuk ( 114) 177 50.0 1.1e-06 NP_001092195 (OMIM: 186960) T-cell leukemia/lympho ( 114) 177 50.0 1.1e-06 XP_016877165 (OMIM: 186960) PREDICTED: T-cell leuk ( 114) 177 50.0 1.1e-06 NP_068801 (OMIM: 186960) T-cell leukemia/lymphoma ( 114) 177 50.0 1.1e-06 NP_001018025 (OMIM: 300116) protein p13 MTCP-1 [Ho ( 107) 142 41.6 0.00035 >>NP_004909 (OMIM: 603769) T-cell leukemia/lymphoma prot (128 aa) initn: 889 init1: 889 opt: 889 Z-score: 1164.3 bits: 221.0 E(85289): 4.1e-58 Smith-Waterman score: 889; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128) 10 20 30 40 50 60 pF1KE2 MASEASVRLGVPPGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEPSIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MASEASVRLGVPPGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEPSIT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 VHLWQMAVHTRELLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQLVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 VHLWQMAVHTRELLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQLVL 70 80 90 100 110 120 pF1KE2 TYQPERKD :::::::: NP_004 TYQPERKD >>XP_016877166 (OMIM: 186960) PREDICTED: T-cell leukemia (114 aa) initn: 232 init1: 161 opt: 177 Z-score: 241.2 bits: 50.0 E(85289): 1.1e-06 Smith-Waterman score: 195; 30.1% identity (60.2% similar) in 113 aa overlap (13-125:15-113) 10 20 30 40 50 pF1KE2 MASEASVRLGVPPGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEPS : ::: . .: ::. ..:. ...... .: . XP_016 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIK------------DRLQ-- 10 20 30 40 60 70 80 90 100 110 pF1KE2 ITVHLWQMAVHTRELLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQL . : : . : . .. :. : :: .::::: .::..:::::... : .::..:.. XP_016 LRVLLRREDVVLGRPMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDM 50 60 70 80 90 100 120 pF1KE2 VLTYQPERKD .: :. XP_016 LLELLPDD 110 >>NP_001092195 (OMIM: 186960) T-cell leukemia/lymphoma p (114 aa) initn: 232 init1: 161 opt: 177 Z-score: 241.2 bits: 50.0 E(85289): 1.1e-06 Smith-Waterman score: 195; 30.1% identity (60.2% similar) in 113 aa overlap (13-125:15-113) 10 20 30 40 50 pF1KE2 MASEASVRLGVPPGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEPS : ::: . .: ::. ..:. ...... .: . NP_001 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIK------------DRLQ-- 10 20 30 40 60 70 80 90 100 110 pF1KE2 ITVHLWQMAVHTRELLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQL . : : . : . .. :. : :: .::::: .::..:::::... : .::..:.. NP_001 LRVLLRREDVVLGRPMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDM 50 60 70 80 90 100 120 pF1KE2 VLTYQPERKD .: :. NP_001 LLELLPDD 110 >>XP_016877165 (OMIM: 186960) PREDICTED: T-cell leukemia (114 aa) initn: 232 init1: 161 opt: 177 Z-score: 241.2 bits: 50.0 E(85289): 1.1e-06 Smith-Waterman score: 195; 30.1% identity (60.2% similar) in 113 aa overlap (13-125:15-113) 10 20 30 40 50 pF1KE2 MASEASVRLGVPPGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEPS : ::: . .: ::. ..:. ...... .: . XP_016 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIK------------DRLQ-- 10 20 30 40 60 70 80 90 100 110 pF1KE2 ITVHLWQMAVHTRELLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQL . : : . : . .. :. : :: .::::: .::..:::::... : .::..:.. XP_016 LRVLLRREDVVLGRPMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDM 50 60 70 80 90 100 120 pF1KE2 VLTYQPERKD .: :. XP_016 LLELLPDD 110 >>NP_068801 (OMIM: 186960) T-cell leukemia/lymphoma prot (114 aa) initn: 232 init1: 161 opt: 177 Z-score: 241.2 bits: 50.0 E(85289): 1.1e-06 Smith-Waterman score: 195; 30.1% identity (60.2% similar) in 113 aa overlap (13-125:15-113) 10 20 30 40 50 pF1KE2 MASEASVRLGVPPGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEPS : ::: . .: ::. ..:. ...... .: . NP_068 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIK------------DRLQ-- 10 20 30 40 60 70 80 90 100 110 pF1KE2 ITVHLWQMAVHTRELLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQL . : : . : . .. :. : :: .::::: .::..:::::... : .::..:.. NP_068 LRVLLRREDVVLGRPMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDM 50 60 70 80 90 100 120 pF1KE2 VLTYQPERKD .: :. NP_068 LLELLPDD 110 >>NP_001018025 (OMIM: 300116) protein p13 MTCP-1 [Homo s (107 aa) initn: 202 init1: 126 opt: 142 Z-score: 196.1 bits: 41.6 E(85289): 0.00035 Smith-Waterman score: 224; 36.8% identity (63.2% similar) in 117 aa overlap (9-125:6-106) 10 20 30 40 50 60 pF1KE2 MASEASVRLGVPPGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEPSIT .:.:: .::... :::.:: ::::.:: . . : ::..: : NP_001 MAGEDVGAPPDHLWVHQEGIYRDEYQRTWVAVVEEETSFLR--ARVQQ-------IQ 10 20 30 40 70 80 90 100 110 120 pF1KE2 VHLWQMAVHTRELLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQLVL : : . :.. .::.: ::: .::::: ..: .: .:.: : .. ....:.: NP_001 VPLGD-AARPSHLLTS------QLPLMWQLYPEERYMDNNSRLWQIQHHLMVRGVQELLL 50 60 70 80 90 100 pF1KE2 TYQPERKD :. NP_001 KLLPDD 128 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 12:21:45 2016 done: Sun Nov 6 12:21:46 2016 Total Scan time: 4.890 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]