FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2268, 128 aa
  1>>>pF1KE2268 128 - 128 aa - 128 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0302+/-0.000606; mu= 11.6561+/- 0.036
 mean_var=54.9186+/-11.076, 0's: 0 Z-trim(110.6): 14  B-trim: 7 in 1/47
 Lambda= 0.173067
 statistics sampled from 11692 (11698) to 11692 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.359), width:  16
 Scan time:  1.720

The best scores are:                                      opt bits E(32554)
CCDS32151.1 TCL1B gene_id:9623|Hs108|chr14         ( 128)  889 229.3 5.1e-61


>>CCDS32151.1 TCL1B gene_id:9623|Hs108|chr14              (128 aa)
 initn: 889 init1: 889 opt: 889  Z-score: 1208.9  bits: 229.3 E(32554): 5.1e-61
Smith-Waterman score: 889; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)

               10        20        30        40        50        60
pF1KE2 MASEASVRLGVPPGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEPSIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MASEASVRLGVPPGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEPSIT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 VHLWQMAVHTRELLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQLVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VHLWQMAVHTRELLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQLVL
               70        80        90       100       110       120

               
pF1KE2 TYQPERKD
       ::::::::
CCDS32 TYQPERKD
               




128 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:21:44 2016 done: Sun Nov  6 12:21:45 2016
 Total Scan time:  1.720 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]