FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5351, 306 aa
  1>>>pF1KE5351 306 - 306 aa - 306 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0400+/-0.0007; mu= 15.0609+/- 0.043
 mean_var=113.8100+/-21.954, 0's: 0 Z-trim(113.9): 16  B-trim: 0 in 0/52
 Lambda= 0.120222
 statistics sampled from 14518 (14528) to 14518 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.446), width:  16
 Scan time:  2.500

The best scores are:                                      opt bits E(32554)
CCDS32136.1 ZC3H14 gene_id:79882|Hs108|chr14       ( 306) 2148 382.5 2.2e-106
CCDS32135.1 ZC3H14 gene_id:79882|Hs108|chr14       ( 571) 1327 240.3 2.6e-63
CCDS55938.1 ZC3H14 gene_id:79882|Hs108|chr14       ( 730) 1198 218.0 1.7e-56
CCDS32134.1 ZC3H14 gene_id:79882|Hs108|chr14       ( 579) 1194 217.2 2.3e-56
CCDS32133.1 ZC3H14 gene_id:79882|Hs108|chr14       ( 736) 1194 217.3 2.7e-56


>>CCDS32136.1 ZC3H14 gene_id:79882|Hs108|chr14            (306 aa)
 initn: 2148 init1: 2148 opt: 2148  Z-score: 2023.2  bits: 382.5 E(32554): 2.2e-106
Smith-Waterman score: 2148; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)

               10        20        30        40        50        60
pF1KE5 MRMSSKFPSPPLPIFLPPEPVDLGSITSSSCSLNELDNISHLLRKISADINEIKGMKAAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MRMSSKFPSPPLPIFLPPEPVDLGSITSSSCSLNELDNISHLLRKISADINEIKGMKAAI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LTVEANLFDLNVRVSKNEAKISSLEVKMNEYSTTYECNRQFEDQEEDTESQSRTTDVKII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LTVEANLFDLNVRVSKNEAKISSLEVKMNEYSTTYECNRQFEDQEEDTESQSRTTDVKII
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 GFLRNVEKGTQQRQLLSRLQIDPVMAETLQMSQAEMSELSVAQKPEKLLERCKYWPACKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GFLRNVEKGTQQRQLLSRLQIDPVMAETLQMSQAEMSELSVAQKPEKLLERCKYWPACKN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 GDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 APPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 APPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWI
              250       260       270       280       290       300

             
pF1KE5 RPQTSE
       ::::::
CCDS32 RPQTSE
             

>>CCDS32135.1 ZC3H14 gene_id:79882|Hs108|chr14            (571 aa)
 initn: 904 init1: 838 opt: 1327  Z-score: 1250.1  bits: 240.3 E(32554): 2.6e-63
Smith-Waterman score: 1327; 97.8% identity (98.4% similar) in 185 aa overlap (125-306:387-571)

          100       110       120         130       140       150  
pF1KE5 YECNRQFEDQEEDTESQSRTTDVKIIGFLRNVEK--GTQQRQLLSRLQIDPVMAETLQMS
                                     .:::  ::::::::::::::::::::::::
CCDS32 QEELLAEVVQGQSRTPRISPPIKEEETKGDSVEKNQGTQQRQLLSRLQIDPVMAETLQMS
        360       370       380       390       400       410      

            160       170       180       190       200       210  
pF1KE5 QAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNC
        420       430       440       450       460       470      

            220       230        240       250       260       270 
pF1KE5 KYDAKCTKPDCPFTHVSRRIPVLSPKP-VAPPAPPSSSQLCRYFPACKKMECPFYHPKHC
       ::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::
CCDS32 KYDAKCTKPDCPFTHVSRRIPVLSPKPAVAPPAPPSSSQLCRYFPACKKMECPFYHPKHC
        480       490       500       510       520       530      

             280       290       300      
pF1KE5 RFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE
       :::::::::::::::::::::::::::::::::::
CCDS32 RFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE
        540       550       560       570 

>>CCDS55938.1 ZC3H14 gene_id:79882|Hs108|chr14            (730 aa)
 initn: 1323 init1: 1178 opt: 1198  Z-score: 1127.8  bits: 218.0 E(32554): 1.7e-56
Smith-Waterman score: 1199; 80.1% identity (84.8% similar) in 211 aa overlap (103-306:534-730)

             80        90       100              110       120     
pF1KE5 RVSKNEAKISSLEVKMNEYSTTYECNRQFEDQEEDTE-------SQSRTTDVKIIGFLRN
                                     :::::         .:. ...  . :.:. 
CCDS55 TRDLVQPDKPASPKFIVTLDGVPSPPGYMSDQEEDMCFEGMKPVNQTAASNKGLRGLLH-
           510       520       530       540       550       560   

         130       140       150       160       170       180     
pF1KE5 VEKGTQQRQLLSRLQIDPVMAETLQMSQAEMSELSVAQKPEKLLERCKYWPACKNGDECA
            :: .::::   ::         .::::::::::::::::::::::::::::::::
CCDS55 ----PQQLHLLSRQLEDP---------NAEMSELSVAQKPEKLLERCKYWPACKNGDECA
                570                580       590       600         

         190       200       210       220       230       240     
pF1KE5 YHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAP
     610       620       630       640       650       660         

         250       260       270       280       290       300     
pF1KE5 PSSSQLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PSSSQLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTS
     670       680       690       700       710       720         

        
pF1KE5 E
       :
CCDS55 E
     730

>>CCDS32134.1 ZC3H14 gene_id:79882|Hs108|chr14            (579 aa)
 initn: 1191 init1: 1191 opt: 1194  Z-score: 1125.4  bits: 217.2 E(32554): 2.3e-56
Smith-Waterman score: 1194; 78.2% identity (89.3% similar) in 206 aa overlap (102-306:377-579)

              80        90       100       110       120       130 
pF1KE5 VRVSKNEAKISSLEVKMNEYSTTYECNRQFEDQEEDTESQSRTTDVKIIGFLRNVEKGTQ
                                     . :   .  ..::.. ..   : .: .: .
CCDS32 SKQANKNLILKAISEAQESVTKTTNYSTVPQKQTLPVAPRTRTSQEEL---LAEVVQGQS
        350       360       370       380       390          400   

              140       150       160       170       180       190
pF1KE5 QRQLLSR-LQIDPVMAETLQMSQAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPI
       .   .:  .. . . ..... .::::::::::::::::::::::::::::::::::::::
CCDS32 RTPRISPPIKEEETKGDSVEKNQAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPI
           410       420       430       440       450       460   

              200       210       220       230       240       250
pF1KE5 SPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQ
           470       480       490       500       510       520   

              260       270       280       290       300      
pF1KE5 LCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE
           530       540       550       560       570         

>>CCDS32133.1 ZC3H14 gene_id:79882|Hs108|chr14            (736 aa)
 initn: 732 init1: 684 opt: 1194  Z-score: 1124.0  bits: 217.3 E(32554): 2.7e-56
Smith-Waterman score: 1198; 80.2% identity (86.3% similar) in 212 aa overlap (103-306:534-736)

             80        90       100              110       120     
pF1KE5 RVSKNEAKISSLEVKMNEYSTTYECNRQFEDQEEDTE-------SQSRTTDVKIIGFLRN
                                     :::::         .:. ...  . :.:. 
CCDS32 TRDLVQPDKPASPKFIVTLDGVPSPPGYMSDQEEDMCFEGMKPVNQTAASNKGLRGLLH-
           510       520       530       540       550       560   

         130       140       150       160       170       180     
pF1KE5 VEKGTQQRQLLSRLQIDPVMAETLQMSQAEMSELSVAQKPEKLLERCKYWPACKNGDECA
            :: .::::   ::    . ..:.::::::::::::::::::::::::::::::::
CCDS32 ----PQQLHLLSRQLEDP----NGSFSNAEMSELSVAQKPEKLLERCKYWPACKNGDECA
                570           580       590       600       610    

         190       200       210       220       230        240    
pF1KE5 YHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKP-VAPPA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS32 YHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPAVAPPA
          620       630       640       650       660       670    

          250       260       270       280       290       300    
pF1KE5 PPSSSQLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PPSSSQLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQT
          680       690       700       710       720       730    

         
pF1KE5 SE
       ::
CCDS32 SE
         




306 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:01:55 2016 done: Tue Nov  8 00:01:55 2016
 Total Scan time:  2.500 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]