FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6180, 127 aa
  1>>>pF1KE6180 127 - 127 aa - 127 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8268+/-0.000615; mu= 12.7281+/- 0.037
 mean_var=55.9354+/-11.160, 0's: 0 Z-trim(110.6): 8  B-trim: 17 in 1/49
 Lambda= 0.171487
 statistics sampled from 11711 (11716) to 11711 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.36), width:  16
 Scan time:  1.480

The best scores are:                                      opt bits E(32554)
CCDS32076.1 ATP5S gene_id:27109|Hs108|chr14        ( 127)  928 236.9 2.5e-63
CCDS32075.1 ATP5S gene_id:27109|Hs108|chr14        ( 215)  880 225.2 1.4e-59
CCDS45102.1 ATP5S gene_id:27109|Hs108|chr14        ( 136)  874 223.6 2.8e-59


>>CCDS32076.1 ATP5S gene_id:27109|Hs108|chr14             (127 aa)
 initn: 928 init1: 928 opt: 928  Z-score: 1250.5  bits: 236.9 E(32554): 2.5e-63
Smith-Waterman score: 928; 99.2% identity (99.2% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KE6 MCCAVSEQRLTCADQMMLFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS32 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM
               70        80        90       100       110       120

              
pF1KE6 ETSNICC
       :::::::
CCDS32 ETSNICC
              

>>CCDS32075.1 ATP5S gene_id:27109|Hs108|chr14             (215 aa)
 initn: 880 init1: 880 opt: 880  Z-score: 1182.9  bits: 225.2 E(32554): 1.4e-59
Smith-Waterman score: 880; 99.2% identity (99.2% similar) in 121 aa overlap (1-121:1-121)

               10        20        30        40        50        60
pF1KE6 MCCAVSEQRLTCADQMMLFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS32 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM
               70        80        90       100       110       120

                                                                   
pF1KE6 ETSNICC                                                     
       :                                                           
CCDS32 EGLEHVEKIRLCKCHYIEDDCLLRLSQLENLQKTILEMEIISCGNITDKGIIALRHLRNL
              130       140       150       160       170       180

>>CCDS45102.1 ATP5S gene_id:27109|Hs108|chr14             (136 aa)
 initn: 874 init1: 874 opt: 874  Z-score: 1177.9  bits: 223.6 E(32554): 2.8e-59
Smith-Waterman score: 874; 99.2% identity (99.2% similar) in 120 aa overlap (1-120:1-120)

               10        20        30        40        50        60
pF1KE6 MCCAVSEQRLTCADQMMLFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS45 MCCAVSEQRLTCADQMMPFGKISQQLCGVKKLPWSCDSRYFWGWLNAVFNKVDYDRIRDV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHM
               70        80        90       100       110       120

                       
pF1KE6 ETSNICC         
                       
CCDS45 GNYPIVLLIENADDLQ
              130      




127 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:08:19 2016 done: Tue Nov  8 10:08:19 2016
 Total Scan time:  1.480 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]