FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9682, 323 aa 1>>>pF1KE9682 323 - 323 aa - 323 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.2654+/-0.000887; mu= 7.6299+/- 0.054 mean_var=134.8043+/-26.756, 0's: 0 Z-trim(109.9): 19 B-trim: 0 in 0/52 Lambda= 0.110464 statistics sampled from 11224 (11232) to 11224 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.345), width: 16 Scan time: 1.700 The best scores are: opt bits E(32554) CCDS32066.1 BRMS1L gene_id:84312|Hs108|chr14 ( 323) 2156 354.7 5.6e-98 CCDS8135.1 BRMS1 gene_id:25855|Hs108|chr11 ( 246) 858 147.8 8.4e-36 CCDS44654.1 BRMS1 gene_id:25855|Hs108|chr11 ( 290) 850 146.6 2.3e-35 CCDS44993.1 SUDS3 gene_id:64426|Hs108|chr12 ( 328) 456 83.8 2e-16 >>CCDS32066.1 BRMS1L gene_id:84312|Hs108|chr14 (323 aa) initn: 2156 init1: 2156 opt: 2156 Z-score: 1872.5 bits: 354.7 E(32554): 5.6e-98 Smith-Waterman score: 2156; 100.0% identity (100.0% similar) in 323 aa overlap (1-323:1-323) 10 20 30 40 50 60 pF1KE9 MPVHSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MPVHSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRME 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 CLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 CLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 GIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 GIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 LWNDELQSRKKRKDPFSPDKKKPVVVSGPYIVYMLQDLDILEDWTTIRKAMATLGPHRVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 LWNDELQSRKKRKDPFSPDKKKPVVVSGPYIVYMLQDLDILEDWTTIRKAMATLGPHRVK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 TEPPVKLEKHLHSARSEEGRLYYDGEWYIRGQTICIDKKDECPTSAVITTINHDEVWFKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 TEPPVKLEKHLHSARSEEGRLYYDGEWYIRGQTICIDKKDECPTSAVITTINHDEVWFKR 250 260 270 280 290 300 310 320 pF1KE9 PDGSKSKLYISQLQKGKYSIKHS ::::::::::::::::::::::: CCDS32 PDGSKSKLYISQLQKGKYSIKHS 310 320 >>CCDS8135.1 BRMS1 gene_id:25855|Hs108|chr11 (246 aa) initn: 894 init1: 631 opt: 858 Z-score: 756.3 bits: 147.8 E(32554): 8.4e-36 Smith-Waterman score: 858; 53.4% identity (82.5% similar) in 251 aa overlap (1-244:1-246) 10 20 30 40 50 pF1KE9 MPVHSRGDKKETNHHDEMEVD---YAENEGSSSEDEDTESSSVSE-DGDSSEMDDEDCER :::. .:.: .:::.. :: .: :.:. .:.: .: . .:::::::: :: CCDS81 MPVQP--PSKDT---EEMEAEGDSAAEMNGEEEESEEERSGSQTESEEESSEMDDEDYER 10 20 30 40 50 60 70 80 90 100 110 pF1KE9 RRMECLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIR :: ::..:: .:::::..::..:..:::::. .:.:: : .:::: :::. ::....:: CCDS81 RRSECVSEMLDLEKQFSELKEKLFRERLSQLRLRLEEVGAERAPEYTEPLGGLQRSLKIR 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 TKVAGIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSID .:::::. .::. ..::::::.:...:: ::::::::::.:.::.:.:.::::::.:.: CCDS81 IQVAGIYKGFCLDVIRNKYECELQGAKQHLESEKLLLYDTLQGELQERIQRLEEDRQSLD 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE9 ITSELWNDELQSRKKRK--DPFSPDKKKPV-VVSGPYIVYMLQDLDILEDWTTIRKAMAT ..:: :.:.:..: . . : . :.:.: . .:::::::::::..:::::::.:.:: :. CCDS81 LSSEWWDDKLHARGSSRSWDSLPPSKRKKAPLVSGPYIVYMLQEIDILEDWTAIKKARAA 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE9 LGPHRVKTEPPVKLEKHLHSARSEEGRLYYDGEWYIRGQTICIDKKDECPTSAVITTINH ..:.. :.. : CCDS81 VSPQKRKSDGP 240 >>CCDS44654.1 BRMS1 gene_id:25855|Hs108|chr11 (290 aa) initn: 886 init1: 631 opt: 850 Z-score: 748.3 bits: 146.6 E(32554): 2.3e-35 Smith-Waterman score: 850; 53.4% identity (82.7% similar) in 249 aa overlap (1-242:1-244) 10 20 30 40 50 pF1KE9 MPVHSRGDKKETNHHDEMEVD---YAENEGSSSEDEDTESSSVSE-DGDSSEMDDEDCER :::. .:.: .:::.. :: .: :.:. .:.: .: . .:::::::: :: CCDS44 MPVQP--PSKDT---EEMEAEGDSAAEMNGEEEESEEERSGSQTESEEESSEMDDEDYER 10 20 30 40 50 60 70 80 90 100 110 pF1KE9 RRMECLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIR :: ::..:: .:::::..::..:..:::::. .:.:: : .:::: :::. ::....:: CCDS44 RRSECVSEMLDLEKQFSELKEKLFRERLSQLRLRLEEVGAERAPEYTEPLGGLQRSLKIR 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 TKVAGIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSID .:::::. .::. ..::::::.:...:: ::::::::::.:.::.:.:.::::::.:.: CCDS44 IQVAGIYKGFCLDVIRNKYECELQGAKQHLESEKLLLYDTLQGELQERIQRLEEDRQSLD 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE9 ITSELWNDELQSRKKRK--DPFSPDKKKPV-VVSGPYIVYMLQDLDILEDWTTIRKAMAT ..:: :.:.:..: . . : . :.:.: . .:::::::::::..:::::::.:.:: :. CCDS44 LSSEWWDDKLHARGSSRSWDSLPPSKRKKAPLVSGPYIVYMLQEIDILEDWTAIKKARAA 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE9 LGPHRVKTEPPVKLEKHLHSARSEEGRLYYDGEWYIRGQTICIDKKDECPTSAVITTINH ..:.. :.. CCDS44 VSPQKRKSDDRRTHRPLRVCPARLLWCCWALPLHLALAWTPPLPSSRPAQLWPWS 240 250 260 270 280 290 >>CCDS44993.1 SUDS3 gene_id:64426|Hs108|chr12 (328 aa) initn: 265 init1: 154 opt: 456 Z-score: 408.2 bits: 83.8 E(32554): 2e-16 Smith-Waterman score: 456; 29.0% identity (64.4% similar) in 303 aa overlap (31-321:26-323) 10 20 30 40 50 60 pF1KE9 MPVHSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRME :::. ::. .: . .. .::: : CCDS44 MSAAGLLAPAPAQAGAPPAPEYYPEEDEELESAEDDERSCRGRESDEDTE--DAS 10 20 30 40 50 70 80 90 100 110 120 pF1KE9 CLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVA : .. :......:.:.:...:... .::.. : :: . . :..... : . : CCDS44 ETDLAKHDEEDYVEMKEQMYQDKLASLKRQLQQLQEGTLQEYQKRMKKLDQQYKERIRNA 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE9 GIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSE .. .: :.:. .: : .:. .. :..:. : ... .::::: . .:... ....:.. CCDS44 ELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEKKKMIENEKLTMELTGD 120 130 140 150 160 170 190 200 210 220 230 pF1KE9 -LWNDELQSRKKRK---DPFS-PDKK-KPVVVSGPYIVYMLQDLDILEDWTTIRKAMATL . ...:: :. :: :::. :: . . :.: : .:.:: :. : . CCDS44 SMEVKPIMTRKLRRRPNDPVPIPDKRRKP---APAQLNYLLTDEQIMEDLRTLNKLKSPK 180 190 200 210 220 230 240 250 260 270 280 pF1KE9 GPHRVKTE---P--PVKLEKHLHSARSEEGRLYYDGEWYIRGQTICIDKKDECPTSAVIT : .. : :.. . :: :.:.:::: .:: ..:.: ...::. : ::. CCDS44 RPASPSSPEHLPATPAESPAQRFEARIEDGKLYYDKRWYHKSQAIYLESKDNQKLSCVIS 240 250 260 270 280 290 290 300 310 320 pF1KE9 TINHDEVWFKRP-DGSKSKLYISQLQKGKYSIKHS ... .:.: .. :..: ..:..:::.: . :. CCDS44 SVGANEIWVRKTSDSTKMRIYLGQLQRGLFVIRRRSAA 300 310 320 323 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:31:08 2016 done: Tue Nov 8 10:31:08 2016 Total Scan time: 1.700 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]