(Circular) (Six-base) MAPSORT of: pFN21AE2216.seq Check: 6729 from: 1 to: 5362 pFN21AE2216 5362 bp With 182 enzymes: SgfI * August 16, 2010 14:44 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3172 278 Size: 53 83 186 936 1636 2468 Fragments arranged by size: 2468 1636 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2705 1937 Size: 768 4594 Acc65I G'GTAC_C Cuts at: 2683 2683 Size: 5362 AclI AA'CG_TT Cuts at: 1563 3489 3862 1563 Size: 1926 373 3063 Fragments arranged by size: 3063 1926 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3425 4809 5077 1632 Size: 1793 1384 268 1917 Fragments arranged by size: 1917 1793 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5165 AflIII A'CryG_T Cuts at: 1203 2292 2415 4261 5238 1203 Size: 1089 123 1846 977 1327 Fragments arranged by size: 1846 1327 1089 977 123 AgeI A'CCGG_T Cuts at: 4193 4193 Size: 5362 AhdI GACnn_n'nnGTC Cuts at: 2081 4091 2081 Size: 2010 3352 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5362 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5362 AlwNI CAG_nnn'CTG Cuts at: 2179 2281 3105 4677 2179 Size: 102 824 1572 2864 Fragments arranged by size: 2864 1572 824 102 ApaLI G'TGCA_C Cuts at: 3419 4575 3419 Size: 1156 4206 ApoI r'AATT_y Cuts at: 1493 2589 2671 2897 3049 5158 1493 Size: 1096 82 226 152 2109 1697 Fragments arranged by size: 2109 1697 1096 226 152 82 AseI AT'TA_AT Cuts at: 160 1032 3916 160 Size: 872 2884 1606 Fragments arranged by size: 2884 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5362 AvaI C'yCGr_G Cuts at: 1870 1943 2433 2687 1870 Size: 73 490 254 4545 Fragments arranged by size: 4545 490 254 73 BamHI G'GATC_C Cuts at: 2692 3059 2692 Size: 367 4995 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2683 4138 618 Size: 325 217 627 896 1455 1842 Fragments arranged by size: 1842 1455 896 627 325 217 BanII G_rGCy'C Cuts at: 1391 2333 2481 2538 2681 1391 Size: 942 148 57 143 4072 Fragments arranged by size: 4072 942 148 143 57 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4391 BbvCI CC'TCA_GC Cuts at: 2092 2092 Size: 5362 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 2414 2448 3553 3587 1903 Size: 34 477 34 1105 34 3678 Fragments arranged by size: 3678 1105 477 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3254 4464 3254 Size: 1210 4152 BclI T'GATC_A Cuts at: 1548 2128 1548 Size: 580 4782 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3973 136 Size: 107 122 71 631 605 2301 1525 Fragments arranged by size: 2301 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5357 5357 Size: 5362 BlpI GC'TnA_GC Cuts at: 2625 2779 2625 Size: 154 5208 Bme1580I G_kGCm'C Cuts at: 1790 3423 4579 1790 Size: 1633 1156 2573 Fragments arranged by size: 2573 1633 1156 BmgBI CAC'GTC Cuts at: 1318 2416 1318 Size: 1098 4264 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2025 3093 4051 Size: 416 53 83 399 24 608 1068 958 Cuts at: 4051 442 Size: 1753 Fragments arranged by size: 1753 1068 958 608 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 2186 1056 Size: 1130 4232 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2032 2032 Size: 5362 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2303 2347 4022 1239 Size: 1064 44 1675 2579 Fragments arranged by size: 2579 1675 1064 44 Bpu10I CC'TnA_GC Cuts at: 2092 2092 Size: 5362 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3487 4352 4650 3487 Size: 865 298 4199 Fragments arranged by size: 4199 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2192 2430 4025 882 Size: 617 693 238 1595 2219 Fragments arranged by size: 2219 1595 693 617 238 BsaAI yAC'GTr Cuts at: 493 1204 2295 3153 493 Size: 711 1091 858 2702 Fragments arranged by size: 2702 1091 858 711 BsaBI GATnn'nnATC Cuts at: 5356 5356 Size: 5362 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3169 3551 4186 275 Size: 53 83 186 936 1636 382 635 1451 Fragments arranged by size: 1636 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2145 3795 4193 4467 4614 5025 2145 Size: 1650 398 274 147 411 2482 Fragments arranged by size: 2482 1650 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2080 2110 1178 Size: 30 165 30 677 30 4430 Fragments arranged by size: 4430 677 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2252 1186 Size: 1066 4296 BseYI C'CCAG_C Cuts at: 2106 2584 4565 5061 2106 Size: 478 1981 496 2407 Fragments arranged by size: 2407 1981 496 478 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4789 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2812 3573 4601 1540 Size: 275 186 811 761 1028 2301 Fragments arranged by size: 2301 1028 811 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2538 3423 3508 4579 2538 Size: 885 85 1071 3321 Fragments arranged by size: 3321 1071 885 85 BsmI GAATG_Cn' Cuts at: 2873 2966 2873 Size: 93 5269 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2333 2481 2538 2681 3423 3508 4579 Size: 399 543 148 57 143 742 85 1071 Cuts at: 4579 1391 Size: 2174 Fragments arranged by size: 2174 1071 742 543 399 148 143 85 57 BspEI T'CCGG_A Cuts at: 2145 5025 2145 Size: 2880 2482 BspHI T'CATG_A Cuts at: 3251 4981 3251 Size: 1730 3632 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2717 844 Size: 1873 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3249 1394 Size: 429 1426 3507 Fragments arranged by size: 3507 1426 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2394 3857 4031 65 Size: 1183 1146 1463 174 1396 Fragments arranged by size: 1463 1396 1183 1146 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4006 4193 1700 Size: 110 2196 187 2869 Fragments arranged by size: 2869 2196 187 110 BsrGI T'GTAC_A Cuts at: 96 2418 96 Size: 2322 3040 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5362 BssSI C'ACGA_G Cuts at: 3422 4434 3422 Size: 1012 4350 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5362 BstBI TT'CG_AA Cuts at: 4166 4166 Size: 5362 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5362 BstXI CCAn_nnnn'nTGG Cuts at: 2194 2194 Size: 5362 BstYI r'GATC_y Cuts at: 1972 2692 3059 3444 3461 4913 4999 5011 5357 Size: 720 367 385 17 1452 86 12 346 Cuts at: 5357 1972 Size: 1977 Fragments arranged by size: 1977 1452 720 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 3871 Fragments arranged by size: 3871 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4623 Fragments arranged by size: 4623 683 56 BtsI GCAGTG_nn' Cuts at: 2259 2555 2619 2636 2878 3672 3692 2259 Size: 296 64 17 242 794 20 3929 Fragments arranged by size: 3929 794 296 242 64 20 17 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5362 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5327 DraI TTT'AAA Cuts at: 2666 2666 Size: 5362 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4369 809 Size: 507 3053 1802 Fragments arranged by size: 3053 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2809 3698 5327 Size: 54 1425 50 275 18 979 889 1629 Cuts at: 5327 8 Size: 43 Fragments arranged by size: 1629 1425 979 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2809 1537 Size: 275 997 4090 Fragments arranged by size: 4090 997 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3292 1353 Size: 1939 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3949 4323 4469 387 Size: 1064 138 2360 374 146 1280 Fragments arranged by size: 2360 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2536 2536 Size: 5362 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2303 2347 3425 4022 4809 5077 1239 Size: 393 671 44 1078 597 787 268 1524 Fragments arranged by size: 1524 1078 787 671 597 393 268 44 EcoRI G'AATT_C Cuts at: 2671 3049 2671 Size: 378 4984 FspI TGC'GCA Cuts at: 3868 3868 Size: 5362 HaeII r_GCGC'y Cuts at: 1678 4509 1678 Size: 2831 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2067 2080 2099 2112 4003 Size: 32 135 32 495 13 19 13 1891 Cuts at: 4003 4035 4077 4109 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1891 495 135 42 32 32 32 32 19 13 13 HincII GTy'rAC Cuts at: 669 1657 1938 2706 2952 669 Size: 988 281 768 246 3079 Fragments arranged by size: 3079 988 768 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5362 HpaI GTT'AAC Cuts at: 2952 2952 Size: 5362 KpnI G_GTAC'C Cuts at: 2687 2687 Size: 5362 MfeI C'AATT_G Cuts at: 2961 2961 Size: 5362 MluI A'CGCG_T Cuts at: 5238 5238 Size: 5362 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2525 4476 4660 1305 Size: 1220 1951 184 2007 Fragments arranged by size: 2007 1951 1220 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3540 Fragments arranged by size: 3540 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3320 3679 3838 518 Size: 648 2154 359 159 2042 Fragments arranged by size: 2154 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2162 2278 2778 3455 4603 4848 1606 Size: 556 116 500 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 556 500 245 116 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3871 Fragments arranged by size: 3871 939 552 NdeI CA'TA_TG Cuts at: 387 2356 2577 387 Size: 1969 221 3172 Fragments arranged by size: 3172 1969 221 NheI G'CTAG_C Cuts at: 1052 2182 1052 Size: 1130 4232 NotI GC'GGCC_GC Cuts at: 2809 2809 Size: 5362 NspI r_CATG'y Cuts at: 1132 1229 2720 4265 1132 Size: 97 1491 1545 2229 Fragments arranged by size: 2229 1545 1491 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5362 PciI A'CATG_T Cuts at: 4261 4261 Size: 5362 PflMI CCAn_nnn'nTGG Cuts at: 1108 2281 1108 Size: 1173 4189 PmeI GTTT'AAAC Cuts at: 2666 2666 Size: 5362 PmlI CAC'GTG Cuts at: 2295 2295 Size: 5362 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3431 3463 4944 4976 3431 Size: 32 1481 32 3817 Fragments arranged by size: 3817 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5362 PsiI TTA'TAA Cuts at: 2932 2932 Size: 5362 PstI C_TGCA'G Cuts at: 830 2254 2714 830 Size: 1424 460 3478 Fragments arranged by size: 3478 1424 460 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5362 PvuII CAG'CTG Cuts at: 2162 2278 2162 Size: 116 5246 SacI G_AGCT'C Cuts at: 2538 2538 Size: 5362 SalI G'TCGA_C Cuts at: 1936 2704 1936 Size: 768 4594 SbfI CC_TGCA'GG Cuts at: 2714 2714 Size: 5362 ScaI AGT'ACT Cuts at: 2526 3610 5322 2526 Size: 1084 1712 2566 Fragments arranged by size: 2566 1712 1084 SfcI C'TryA_G Cuts at: 826 1045 2250 2710 3845 4526 4717 826 Size: 219 1205 460 1135 681 191 1471 Fragments arranged by size: 1471 1205 1135 681 460 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5362 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5362 SmaI CCC'GGG Cuts at: 1872 2689 1872 Size: 817 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2433 3466 4367 4629 820 Size: 197 926 490 1033 901 262 1553 Fragments arranged by size: 1553 1033 926 901 490 262 197 SnaBI TAC'GTA Cuts at: 493 3153 493 Size: 2660 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5362 SphI G_CATG'C Cuts at: 1132 2720 1132 Size: 1588 3774 SspI AAT'ATT Cuts at: 5 52 3286 5 Size: 47 3234 2081 Fragments arranged by size: 3234 2081 47 StuI AGG'CCT Cuts at: 1517 2154 2568 1517 Size: 637 414 4311 Fragments arranged by size: 4311 637 414 StyI C'CwwG_G Cuts at: 513 1065 2004 2801 513 Size: 552 939 797 3074 Fragments arranged by size: 3074 939 797 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3389 3406 3559 3744 4189 325 Size: 1255 1809 17 153 185 445 1498 Fragments arranged by size: 1809 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2418 2524 3608 Size: 274 80 33 51 1443 441 106 1084 Cuts at: 3608 5320 96 Size: 1712 138 Fragments arranged by size: 1712 1443 1084 441 274 138 106 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2238 2270 2279 2311 5322 5354 2238 Size: 32 9 32 3011 32 2246 Fragments arranged by size: 3011 2246 32 32 32 9 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5362 XbaI T'CTAG_A Cuts at: 2698 2698 Size: 5362 XhoI C'TCGA_G Cuts at: 1943 2433 1943 Size: 490 4872 XmaI C'CCGG_G Cuts at: 1870 2687 1870 Size: 817 4545 XmnI GAAnn'nnTTC Cuts at: 3491 3491 Size: 5362 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3170 276 Size: 53 83 186 936 1636 2468 Fragments arranged by size: 2468 1636 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PmlI PpiI PshAI PsiI PstI PvuI PvuII SacI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BfrBI BsiWI BsmBI BstZ17I Bsu36I DraIII EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PpuMI PspOMI PspXI PsrI RsrII SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI