FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9683, 412 aa 1>>>pF1KE9683 412 - 412 aa - 412 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.2973+/-0.000886; mu= 13.3789+/- 0.054 mean_var=95.7323+/-18.597, 0's: 0 Z-trim(108.5): 9 B-trim: 0 in 0/53 Lambda= 0.131083 statistics sampled from 10248 (10251) to 10248 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.315), width: 16 Scan time: 2.750 The best scores are: opt bits E(32554) CCDS31946.1 SKA3 gene_id:221150|Hs108|chr13 ( 412) 2699 520.6 1.1e-147 CCDS53856.1 SKA3 gene_id:221150|Hs108|chr13 ( 388) 2450 473.5 1.5e-133 >>CCDS31946.1 SKA3 gene_id:221150|Hs108|chr13 (412 aa) initn: 2699 init1: 2699 opt: 2699 Z-score: 2765.1 bits: 520.6 E(32554): 1.1e-147 Smith-Waterman score: 2699; 99.8% identity (100.0% similar) in 412 aa overlap (1-412:1-412) 10 20 30 40 50 60 pF1KE9 MDPIRSFCGKLRSLASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: CCDS31 MDPIRSFCGKLRSLASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDVNI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 LLDKARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQKYGYSPRVKKNSVHEQEAINSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 LLDKARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQKYGYSPRVKKNSVHEQEAINSD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 PELSNCENFQKTDVKDDLSDPPVASSCISEKSPRSPQLSDFGLERYIVSQVLPNPPQAVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 PELSNCENFQKTDVKDDLSDPPVASSCISEKSPRSPQLSDFGLERYIVSQVLPNPPQAVN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 NYKEEPVIVTPPTKQSLVKVLKTPKCALKMDDFECVTPKLEHFGISEYTMCLNEDYTMGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 NYKEEPVIVTPPTKQSLVKVLKTPKCALKMDDFECVTPKLEHFGISEYTMCLNEDYTMGL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 KNARNNKSEEAIDTESRLNDNVFATPSPIIQQLEKSDAEYTNSPLVPTFCTPGLKIPSTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 KNARNNKSEEAIDTESRLNDNVFATPSPIIQQLEKSDAEYTNSPLVPTFCTPGLKIPSTK 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE9 NSIALVSTNYPLSKTNSSSNDLEVEDRTSLVLNSDTCFENLTDPSSPTISSYENLLRTPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 NSIALVSTNYPLSKTNSSSNDLEVEDRTSLVLNSDTCFENLTDPSSPTISSYENLLRTPT 310 320 330 340 350 360 370 380 390 400 410 pF1KE9 PPEVTKIPEDILQLLSKYNSNLATPIAIKAVPPSKRFLKHGQNIRDVSNKEN :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 PPEVTKIPEDILQLLSKYNSNLATPIAIKAVPPSKRFLKHGQNIRDVSNKEN 370 380 390 400 410 >>CCDS53856.1 SKA3 gene_id:221150|Hs108|chr13 (388 aa) initn: 2450 init1: 2450 opt: 2450 Z-score: 2511.0 bits: 473.5 E(32554): 1.5e-133 Smith-Waterman score: 2450; 99.7% identity (100.0% similar) in 373 aa overlap (1-373:1-373) 10 20 30 40 50 60 pF1KE9 MDPIRSFCGKLRSLASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: CCDS53 MDPIRSFCGKLRSLASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDVNI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 LLDKARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQKYGYSPRVKKNSVHEQEAINSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 LLDKARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQKYGYSPRVKKNSVHEQEAINSD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 PELSNCENFQKTDVKDDLSDPPVASSCISEKSPRSPQLSDFGLERYIVSQVLPNPPQAVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 PELSNCENFQKTDVKDDLSDPPVASSCISEKSPRSPQLSDFGLERYIVSQVLPNPPQAVN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 NYKEEPVIVTPPTKQSLVKVLKTPKCALKMDDFECVTPKLEHFGISEYTMCLNEDYTMGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 NYKEEPVIVTPPTKQSLVKVLKTPKCALKMDDFECVTPKLEHFGISEYTMCLNEDYTMGL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 KNARNNKSEEAIDTESRLNDNVFATPSPIIQQLEKSDAEYTNSPLVPTFCTPGLKIPSTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 KNARNNKSEEAIDTESRLNDNVFATPSPIIQQLEKSDAEYTNSPLVPTFCTPGLKIPSTK 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE9 NSIALVSTNYPLSKTNSSSNDLEVEDRTSLVLNSDTCFENLTDPSSPTISSYENLLRTPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 NSIALVSTNYPLSKTNSSSNDLEVEDRTSLVLNSDTCFENLTDPSSPTISSYENLLRTPT 310 320 330 340 350 360 370 380 390 400 410 pF1KE9 PPEVTKIPEDILQLLSKYNSNLATPIAIKAVPPSKRFLKHGQNIRDVSNKEN ::::::::::::: CCDS53 PPEVTKIPEDILQKFQWIYPTQKLNKMR 370 380 412 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:32:00 2016 done: Tue Nov 8 10:32:01 2016 Total Scan time: 2.750 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]