FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0188, 325 aa
  1>>>pF1KE0188 325 - 325 aa - 325 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7335+/-0.000784; mu= 13.5815+/- 0.047
 mean_var=67.3791+/-13.482, 0's: 0 Z-trim(107.7): 13  B-trim: 0 in 0/50
 Lambda= 0.156247
 statistics sampled from 9714 (9718) to 9714 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.299), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS31866.1 C12orf29 gene_id:91298|Hs108|chr12     ( 325) 2301 527.4 5.9e-150


>>CCDS31866.1 C12orf29 gene_id:91298|Hs108|chr12          (325 aa)
 initn: 2301 init1: 2301 opt: 2301  Z-score: 2805.7  bits: 527.4 E(32554): 5.9e-150
Smith-Waterman score: 2301; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)

               10        20        30        40        50        60
pF1KE0 MKRLGSVQRKMPCVFVTEVKEEPSSKREHQPFKVLATETVSHKALDADIYSAIPTEKVDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MKRLGSVQRKMPCVFVTEVKEEPSSKREHQPFKVLATETVSHKALDADIYSAIPTEKVDG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TCCYVTTYKDQPYLWARLDRKPNKQAEKRFKNFLHSKENPKEFFWNVEEDFKPAPECWIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TCCYVTTYKDQPYLWARLDRKPNKQAEKRFKNFLHSKENPKEFFWNVEEDFKPAPECWIP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AKETEQINGNPVPDENGHIPGWVPVEKNNKQYCWHSSVVNYEFEIALVLKHHPDDSGLLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AKETEQINGNPVPDENGHIPGWVPVEKNNKQYCWHSSVVNYEFEIALVLKHHPDDSGLLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 ISAVPLSDLLEQTLELIGTNINGNPYGLGSKKHPLHLLIPHGAFQIRNLPSLKHNDLVSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ISAVPLSDLLEQTLELIGTNINGNPYGLGSKKHPLHLLIPHGAFQIRNLPSLKHNDLVSW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 FEDCKEGKIEGIVWHCSDGCLIKVHRHHLGLCWPIPDTYMNSRPVIINMNLNKCDSAFDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FEDCKEGKIEGIVWHCSDGCLIKVHRHHLGLCWPIPDTYMNSRPVIINMNLNKCDSAFDI
              250       260       270       280       290       300

              310       320     
pF1KE0 KCLFNHFLKIDNQKFVRLKDIIFDV
       :::::::::::::::::::::::::
CCDS31 KCLFNHFLKIDNQKFVRLKDIIFDV
              310       320     




325 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:27:55 2016 done: Sun Nov  6 12:27:55 2016
 Total Scan time:  2.260 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]