FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7901, 109 aa 1>>>pF1KB7901 109 - 109 aa - 109 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.3336+/-0.000722; mu= 0.9092+/- 0.044 mean_var=235.3462+/-46.561, 0's: 0 Z-trim(118.7): 11 B-trim: 10 in 1/50 Lambda= 0.083603 statistics sampled from 19753 (19763) to 19753 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.864), E-opt: 0.2 (0.607), width: 16 Scan time: 1.820 The best scores are: opt bits E(32554) CCDS44936.1 HMGA2 gene_id:8091|Hs108|chr12 ( 109) 745 100.1 2.8e-22 CCDS73492.1 HMGA2 gene_id:8091|Hs108|chr12 ( 118) 658 89.7 4.3e-19 CCDS31854.1 HMGA2 gene_id:8091|Hs108|chr12 ( 106) 588 81.2 1.4e-16 CCDS81709.1 HMGA2 gene_id:8091|Hs108|chr12 ( 90) 584 80.6 1.7e-16 CCDS73491.1 HMGA2 gene_id:8091|Hs108|chr12 ( 147) 583 80.7 2.6e-16 >>CCDS44936.1 HMGA2 gene_id:8091|Hs108|chr12 (109 aa) initn: 745 init1: 745 opt: 745 Z-score: 513.4 bits: 100.1 E(32554): 2.8e-22 Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 109 aa overlap (1-109:1-109) 10 20 30 40 50 60 pF1KB7 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP 10 20 30 40 50 60 70 80 90 100 pF1KB7 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED 70 80 90 100 >>CCDS73492.1 HMGA2 gene_id:8091|Hs108|chr12 (118 aa) initn: 658 init1: 658 opt: 658 Z-score: 456.3 bits: 89.7 E(32554): 4.3e-19 Smith-Waterman score: 658; 100.0% identity (100.0% similar) in 94 aa overlap (1-94:1-94) 10 20 30 40 50 60 pF1KB7 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP 10 20 30 40 50 60 70 80 90 100 pF1KB7 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED :::::::::::::::::::::::::::::::::: CCDS73 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQVNVALPGKDHPGNLIYLLFSKNAT 70 80 90 100 110 >>CCDS31854.1 HMGA2 gene_id:8091|Hs108|chr12 (106 aa) initn: 583 init1: 583 opt: 588 Z-score: 411.3 bits: 81.2 E(32554): 1.4e-16 Smith-Waterman score: 588; 81.0% identity (91.4% similar) in 105 aa overlap (1-105:1-105) 10 20 30 40 50 60 pF1KB7 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP 10 20 30 40 50 60 70 80 90 100 pF1KB7 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED ::::::::::::::::::::::: . . . . .. . .:...: CCDS31 SKAAQKKAEATGEKRPRGRPRKWDNLLPRTSSKKKTSLGNSTKRSH 70 80 90 100 >>CCDS81709.1 HMGA2 gene_id:8091|Hs108|chr12 (90 aa) initn: 655 init1: 584 opt: 584 Z-score: 409.5 bits: 80.6 E(32554): 1.7e-16 Smith-Waterman score: 584; 97.6% identity (98.8% similar) in 85 aa overlap (1-85:1-85) 10 20 30 40 50 60 pF1KB7 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP 10 20 30 40 50 60 70 80 90 100 pF1KB7 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED ::::::::::::::::::::::: . CCDS81 SKAAQKKAEATGEKRPRGRPRKWEEFYIAA 70 80 90 >>CCDS73491.1 HMGA2 gene_id:8091|Hs108|chr12 (147 aa) initn: 583 init1: 583 opt: 583 Z-score: 406.2 bits: 80.7 E(32554): 2.6e-16 Smith-Waterman score: 583; 100.0% identity (100.0% similar) in 83 aa overlap (1-83:1-83) 10 20 30 40 50 60 pF1KB7 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP 10 20 30 40 50 60 70 80 90 100 pF1KB7 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED ::::::::::::::::::::::: CCDS73 SKAAQKKAEATGEKRPRGRPRKWAGVQWYNLGSLQPPPPRFKQFSCLRLLSSWDYRHPPP 70 80 90 100 110 120 109 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 12:28:58 2016 done: Sun Nov 6 12:28:59 2016 Total Scan time: 1.820 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]