FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4066, 346 aa 1>>>pF1KE4066 346 - 346 aa - 346 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.5695+/-0.000734; mu= 10.0924+/- 0.045 mean_var=195.2640+/-38.702, 0's: 0 Z-trim(116.9): 15 B-trim: 0 in 0/56 Lambda= 0.091783 statistics sampled from 17593 (17606) to 17593 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.541), width: 16 Scan time: 2.870 The best scores are: opt bits E(32554) CCDS31847.1 MARCH9 gene_id:92979|Hs108|chr12 ( 346) 2433 333.6 1.5e-91 CCDS33376.1 MARCH4 gene_id:57574|Hs108|chr2 ( 410) 1194 169.6 4.2e-42 CCDS47192.1 MARCH11 gene_id:441061|Hs108|chr5 ( 402) 1034 148.4 9.8e-36 >>CCDS31847.1 MARCH9 gene_id:92979|Hs108|chr12 (346 aa) initn: 2433 init1: 2433 opt: 2433 Z-score: 1757.0 bits: 333.6 E(32554): 1.5e-91 Smith-Waterman score: 2433; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346) 10 20 30 40 50 60 pF1KE4 MLKSRLRMFLNELKLLVLTGGGRPRAEPQPRGGRGGGCGWAPFAGCSTRDGDGDEEEYYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MLKSRLRMFLNELKLLVLTGGGRPRAEPQPRGGRGGGCGWAPFAGCSTRDGDGDEEEYYG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 SEPRARGLAGDKEPRAGPLPPPAPPLPPPGALDALSLSSSLDSGLRTPQCRICFQGPEQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 SEPRARGLAGDKEPRAGPLPPPAPPLPPPGALDALSLSSSLDSGLRTPQCRICFQGPEQG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 ELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPLQWQAISLTVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 ELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPLQWQAISLTVI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 EKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQICYGMYGFMDVVCIGLIIH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 EKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQICYGMYGFMDVVCIGLIIH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 EGSSVYRIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNSRTGPTSGATSRPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 EGSSVYRIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNSRTGPTSGATSRPP 250 260 270 280 290 300 310 320 330 340 pF1KE4 AAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV :::::::::::::::::::::::::::::::::::::::::::::: CCDS31 AAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV 310 320 330 340 >>CCDS33376.1 MARCH4 gene_id:57574|Hs108|chr2 (410 aa) initn: 1447 init1: 1174 opt: 1194 Z-score: 869.4 bits: 169.6 E(32554): 4.2e-42 Smith-Waterman score: 1367; 58.3% identity (70.7% similar) in 386 aa overlap (1-346:37-410) 10 20 30 pF1KE4 MLKSRLRMFLNELKLLVLTGGGRPRAEPQP .:: : ::..:.::...: :: : : CCDS33 GLLWWWWCCCSGWYCYGLCAPAPQMLRHQGLLKCRCRMLFNDLKVFLLR---RPPQAPLP 10 20 30 40 50 60 40 50 60 70 80 pF1KE4 RGGRGGGCGWAPFAGCSTRDGDGDEEEYYGSEPRARGLAGDKEPRAGPLPPPAPP----- : : : . : : . : :: ..: .:: : ::: :: CCDS33 MHGDPQPPGLAA-NNTLPALGAGGWAGWRG--PRE--VVG-REPPPVPPPPPLPPSSVED 70 80 90 100 110 90 100 110 120 pF1KE4 ------LPPPGAL---------------DALSLSSSLDSGLRTPQCRICFQGPEQGELLS ::..: : ::.::::::.::: ::::::::::::::: CCDS33 DWGGPATEPPASLLSSASSDDFCKEKTEDRYSLGSSLDSGMRTPLCRICFQGPEQGELLS 120 130 140 150 160 170 130 140 150 160 170 180 pF1KE4 PCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPLQWQAISLTVIEKVQ ::::::::.::::::::.:::::: :::::::.::.:.:::::::::::::::::::::: CCDS33 PCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAISLTVIEKVQ 180 190 200 210 220 230 190 200 210 220 230 240 pF1KE4 IAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQICYGMYGFMDVVCIGLIIHEGSS .:: .::::::.:::::::::..::::.:::::::::::::::::::::::::::::: : CCDS33 VAAAILGSLFLIASISWLIWSTFSPSARWQRQDLLFQICYGMYGFMDVVCIGLIIHEGPS 240 250 260 270 280 290 250 260 270 280 290 pF1KE4 VYRIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNSRTG----PTS----GAT :::::::::::::::::::::::::. . .:: ...::.: . :.: ..: CCDS33 VYRIFKRWQAVNQQWKVLNYDKTKDLEDQKAGG---RTNPRTSSSTQANIPSSEEETAGT 300 310 320 330 340 350 300 310 320 330 340 pF1KE4 SRP---PAAQRMRTLLP---QRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV : :: . : ..:.:::::.:..::: . :: :.::.::::::: CCDS33 PAPEQGPAQAAGHPSGPLSHHHCAYTILHILSHLRPHEQRSPPGSSRELVMRVTTV 360 370 380 390 400 410 >>CCDS47192.1 MARCH11 gene_id:441061|Hs108|chr5 (402 aa) initn: 1103 init1: 923 opt: 1034 Z-score: 755.0 bits: 148.4 E(32554): 9.8e-36 Smith-Waterman score: 1037; 48.0% identity (69.0% similar) in 329 aa overlap (19-346:102-402) 10 20 30 40 pF1KE4 MLKSRLRMFLNELKLLVLTGGGRPRAEPQPRGGRGG-GCGWAPFAGCS .: : :: :. ...:: : . : .: CCDS47 VAPRCRGADELPPPPLPLQPAGQEVAAAGDSGEG-PRRLPEAAAAKGGPGESEAGAGGER 80 90 100 110 120 130 50 60 70 80 90 100 pF1KE4 TRDGDGDEEEYYGSEPRARGLAGDKEPRAGPLPPPAPPLPPPGALDALSLSSSLDSGLRT : : ::. : . . .: . ::: :. CCDS47 ERRGAGDQPETRSVCSSRSSSSGGGDQRAGHQHQHHQPI--------------------- 140 150 160 110 120 130 140 150 160 pF1KE4 PQCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTK :.::::: ::::::.::::::::: ::: ::..::::::::.:::: ..:.:.::. : CCDS47 --CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVIAIKMK 170 180 190 200 210 220 170 180 190 200 210 220 pF1KE4 NPLQWQAISLTVIEKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQICYGMY .: :::.::.:..::::. :..::::::.::..::.::..:: : :::.:.::::::::: CCDS47 QPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQICYGMY 230 240 250 260 270 280 230 240 250 260 270 280 pF1KE4 GFMDVVCIGLIIHEGSSVYRIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNS ::::.::::::.:::..:::.::::.::: .: ::::::. :: .. :.:. . CCDS47 GFMDLVCIGLIVHEGAAVYRVFKRWRAVNLHWDVLNYDKATDI----EESSRGESSTSRT 290 300 310 320 330 340 290 300 310 320 330 340 pF1KE4 RTGPTSGATSRPPAAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV : .. .: . . : .:::..:::....:: . : ..:. :::::::.: CCDS47 LWLPLTALRNRNLVHPTQLTSPRFQCGYVLLHLFNRMRPHEDLSEDNSSGEVVMRVTSV 350 360 370 380 390 400 346 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:14:22 2016 done: Sun Nov 6 04:14:23 2016 Total Scan time: 2.870 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]