FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3707, 301 aa 1>>>pF1KE3707 301 - 301 aa - 301 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.0123+/-0.000426; mu= -8.7746+/- 0.027 mean_var=358.2484+/-70.466, 0's: 0 Z-trim(121.9): 56 B-trim: 49 in 1/58 Lambda= 0.067761 statistics sampled from 39249 (39305) to 39249 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.461), width: 16 Scan time: 7.300 The best scores are: opt bits E(85289) NP_001159490 (OMIM: 601583,609062) POU domain, cla ( 655) 926 103.9 8.6e-22 NP_009183 (OMIM: 601583,609062) POU domain, class ( 691) 658 77.8 6.9e-14 XP_011513415 (OMIM: 601583,609062) PREDICTED: POU ( 720) 658 77.8 7.1e-14 NP_001116229 (OMIM: 173110,613038) pituitary-speci ( 317) 487 60.8 4.2e-09 NP_000297 (OMIM: 173110,613038) pituitary-specific ( 291) 476 59.7 8.2e-09 XP_011507957 (OMIM: 164175) PREDICTED: POU domain, ( 671) 481 60.4 1.1e-08 XP_011507956 (OMIM: 164175) PREDICTED: POU domain, ( 743) 481 60.5 1.2e-08 NP_001185712 (OMIM: 164175) POU domain, class 2, t ( 755) 481 60.5 1.2e-08 NP_002688 (OMIM: 164175) POU domain, class 2, tran ( 766) 481 60.5 1.2e-08 XP_011507955 (OMIM: 164175) PREDICTED: POU domain, ( 769) 481 60.5 1.2e-08 NP_000298 (OMIM: 300039,304400) POU domain, class ( 361) 470 59.1 1.5e-08 NP_006227 (OMIM: 602480) POU domain, class 3, tran ( 500) 472 59.5 1.6e-08 NP_001193955 (OMIM: 164176) POU domain, class 2, t ( 467) 471 59.3 1.6e-08 NP_001193954 (OMIM: 164176) POU domain, class 2, t ( 479) 471 59.3 1.7e-08 XP_011525343 (OMIM: 164176) PREDICTED: POU domain, ( 501) 471 59.4 1.7e-08 XP_011525345 (OMIM: 164176) PREDICTED: POU domain, ( 537) 470 59.3 2e-08 XP_016882383 (OMIM: 164176) PREDICTED: POU domain, ( 602) 471 59.4 2e-08 XP_016882384 (OMIM: 164176) PREDICTED: POU domain, ( 602) 471 59.4 2e-08 XP_011525342 (OMIM: 164176) PREDICTED: POU domain, ( 624) 471 59.4 2e-08 NP_005595 (OMIM: 600494) POU domain, class 3, tran ( 443) 467 58.9 2.1e-08 NP_001185715 (OMIM: 164175) POU domain, class 2, t ( 703) 472 59.6 2.1e-08 XP_016882385 (OMIM: 164176) PREDICTED: POU domain, ( 600) 470 59.3 2.1e-08 XP_016882381 (OMIM: 164176) PREDICTED: POU domain, ( 701) 470 59.4 2.4e-08 XP_016882379 (OMIM: 164176) PREDICTED: POU domain, ( 711) 470 59.4 2.4e-08 XP_016882375 (OMIM: 164176) PREDICTED: POU domain, ( 711) 470 59.4 2.4e-08 XP_016882377 (OMIM: 164176) PREDICTED: POU domain, ( 711) 470 59.4 2.4e-08 XP_016882376 (OMIM: 164176) PREDICTED: POU domain, ( 711) 470 59.4 2.4e-08 XP_016882378 (OMIM: 164176) PREDICTED: POU domain, ( 711) 470 59.4 2.4e-08 XP_016882374 (OMIM: 164176) PREDICTED: POU domain, ( 723) 470 59.4 2.4e-08 XP_016882373 (OMIM: 164176) PREDICTED: POU domain, ( 723) 470 59.4 2.4e-08 NP_001234923 (OMIM: 164176) POU domain, class 2, t ( 400) 453 57.5 5e-08 NP_002689 (OMIM: 164176) POU domain, class 2, tran ( 463) 453 57.6 5.5e-08 XP_011525344 (OMIM: 164176) PREDICTED: POU domain, ( 485) 453 57.6 5.7e-08 XP_005259067 (OMIM: 164176) PREDICTED: POU domain, ( 586) 453 57.7 6.6e-08 XP_016882382 (OMIM: 164176) PREDICTED: POU domain, ( 608) 453 57.7 6.8e-08 XP_016872976 (OMIM: 607394) PREDICTED: POU domain, ( 356) 447 56.9 6.8e-08 XP_011541045 (OMIM: 607394) PREDICTED: POU domain, ( 403) 447 56.9 7.5e-08 XP_011541044 (OMIM: 607394) PREDICTED: POU domain, ( 403) 447 56.9 7.5e-08 XP_011541043 (OMIM: 607394) PREDICTED: POU domain, ( 403) 447 56.9 7.5e-08 XP_011541041 (OMIM: 607394) PREDICTED: POU domain, ( 432) 447 57.0 7.9e-08 XP_011541042 (OMIM: 607394) PREDICTED: POU domain, ( 432) 447 57.0 7.9e-08 NP_055167 (OMIM: 607394) POU domain, class 2, tran ( 436) 447 57.0 8e-08 NP_001231611 (OMIM: 607394) POU domain, class 2, t ( 438) 447 57.0 8e-08 XP_016882380 (OMIM: 164176) PREDICTED: POU domain, ( 707) 451 57.5 8.7e-08 NP_002690 (OMIM: 602479) POU domain, class 3, tran ( 451) 427 55.0 3.2e-07 NP_006228 (OMIM: 601632) POU domain, class 4, tran ( 419) 426 54.9 3.2e-07 NP_002692 (OMIM: 164177) POU domain, class 5, tran ( 360) 414 53.7 6.5e-07 NP_001153014 (OMIM: 615739) putative POU domain, c ( 359) 396 51.9 2.2e-06 NP_004566 (OMIM: 113725) POU domain, class 4, tran ( 409) 397 52.1 2.2e-06 NP_002691 (OMIM: 602459,602460) POU domain, class ( 338) 386 50.9 4.1e-06 >>NP_001159490 (OMIM: 601583,609062) POU domain, class 6 (655 aa) initn: 1102 init1: 896 opt: 926 Z-score: 512.2 bits: 103.9 E(85289): 8.6e-22 Smith-Waterman score: 1117; 59.3% identity (80.7% similar) in 305 aa overlap (1-294:328-631) 10 20 pF1KE3 MPGISSQILTNAQGQVIGTLPWVVNSA-SV . :...:..::::::.:::.: . : . : NP_001 NNPLASQAAAAAAAMSSIASSQAFGNALSSLQGVTGQLVTNAQGQIIGTIPLMPNPGPSS 300 310 320 330 340 350 30 40 50 60 70 80 pF1KE3 AAPAPAQSLQVQAVTPQLLLNAQGQVIATLASSPLPPPVAVRKPS-TPESPAKSEVQPIQ : . .:.:::: .::::: :::::.:::. .. . : . .. . .: .:... :: : NP_001 QAASGTQGLQVQPITPQLLTNAQGQIIATVIGNQILPVINTQGITLSPIKPGQQLHQPSQ 360 370 380 390 400 410 90 100 110 120 130 pF1KE3 PT--PTVPQPAVV-IA------SPAPAAKPSASAPIPITCSETPTVSQLVSKPHTPSLDE . .. : .. .: : .:. . :.:. . : . .:.::::.:.: . . NP_001 TSVGQAASQGNLLHLAHSQASMSQSPVRQASSSSSSS-SSSSALSVGQLVSNPQTAAGEV 420 430 440 450 460 470 140 150 160 170 180 190 pF1KE3 DGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQ ::.:::::::::: :::::::::::::::::::.:::::::::::::::::::::::::: NP_001 DGVNLEEIREFAKAFKIRRLSLGLTQTQVGQALSATEGPAYSQSAICRFEKLDITPKSAQ 480 490 500 510 520 530 200 210 220 230 240 250 pF1KE3 KLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLP :.:::::.:. ::: :.. :.::: ::.:.::::::::::::::::.: :::.:::: : NP_001 KIKPVLERWMAEAEARHRAGMQNLTEFIGSEPSKKRKRRTSFTPQALEILNAHFEKNTHP 540 550 560 570 580 590 260 270 280 290 300 pF1KE3 TGQEITEIAKELNYDREVVRVWFCNRRQTLKNTSKLNVFQIP .:::.::::..::::::::::::::.::.:::: : NP_001 SGQEMTEIAEKLNYDREVVRVWFCNKRQALKNTIKRLKQHEPATAVPLEPLTDSLEENS 600 610 620 630 640 650 >>NP_009183 (OMIM: 601583,609062) POU domain, class 6, t (691 aa) initn: 1102 init1: 579 opt: 658 Z-score: 370.3 bits: 77.8 E(85289): 6.9e-14 Smith-Waterman score: 977; 53.2% identity (71.3% similar) in 327 aa overlap (15-294:342-667) 10 20 30 40 pF1KE3 MPGISSQILTNAQGQVIGTLPWVVNSA-SVAAPAPAQSLQVQAV :.:::.: . : . : : . .:.:::: . NP_009 MSSIASSQAFGNALSSLQGVTGQLVTNAQGQIIGTIPLMPNPGPSSQAASGTQGLQVQPI 320 330 340 350 360 370 50 60 70 80 90 pF1KE3 TPQLLLNAQGQVIATLASSPLPPPVAVRKPS-TPESPAKSEVQPIQPT--PTVPQPAVV- ::::: :::::.:::. .. . : . .. . .: .:... :: : . .. : .. NP_009 TPQLLTNAQGQIIATVIGNQILPVINTQGITLSPIKPGQQLHQPSQTSVGQAASQGNLLH 380 390 400 410 420 430 100 110 120 130 140 150 pF1KE3 IA------SPAPAAKPSASAPIPITCSETPTVSQLVSKPHTPSLDEDGINLEEIREFAKN .: : .:. . :.:. . : . .:.::::.:.: . . ::.:::::::::: NP_009 LAHSQASMSQSPVRQASSSSSSS-SSSSALSVGQLVSNPQTAAGEVDGVNLEEIREFAKA 440 450 460 470 480 490 160 170 180 pF1KE3 FKIRRLSLGLTQTQVGQALTATEGPAYSQSAICR-------------------------- :::::::::::::::::::.:::::::::::::: NP_009 FKIRRLSLGLTQTQVGQALSATEGPAYSQSAICRHTILRSHFFLPQEAQENTIASSLTAK 500 510 520 530 540 550 190 200 210 220 230 pF1KE3 ----------FEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKR :::::::::::::.:::::.:. ::: :.. :.::: ::.:.:::::::: NP_009 LNPGLLYPARFEKLDITPKSAQKIKPVLERWMAEAEARHRAGMQNLTEFIGSEPSKKRKR 560 570 580 590 600 610 240 250 260 270 280 290 pF1KE3 RTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKNTSKLNV ::::::::.: :::.:::: :.:::.::::..::::::::::::::.::.:::: : NP_009 RTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQALKNTIKRLK 620 630 640 650 660 670 300 pF1KE3 FQIP NP_009 QHEPATAVPLEPLTDSLEENS 680 690 >>XP_011513415 (OMIM: 601583,609062) PREDICTED: POU doma (720 aa) initn: 1102 init1: 579 opt: 658 Z-score: 370.0 bits: 77.8 E(85289): 7.1e-14 Smith-Waterman score: 977; 53.2% identity (71.3% similar) in 327 aa overlap (15-294:371-696) 10 20 30 40 pF1KE3 MPGISSQILTNAQGQVIGTLPWVVNSA-SVAAPAPAQSLQVQAV :.:::.: . : . : : . .:.:::: . XP_011 MSSIASSQAFGNALSSLQGVTGQLVTNAQGQIIGTIPLMPNPGPSSQAASGTQGLQVQPI 350 360 370 380 390 400 50 60 70 80 90 pF1KE3 TPQLLLNAQGQVIATLASSPLPPPVAVRKPS-TPESPAKSEVQPIQPT--PTVPQPAVV- ::::: :::::.:::. .. . : . .. . .: .:... :: : . .. : .. XP_011 TPQLLTNAQGQIIATVIGNQILPVINTQGITLSPIKPGQQLHQPSQTSVGQAASQGNLLH 410 420 430 440 450 460 100 110 120 130 140 150 pF1KE3 IA------SPAPAAKPSASAPIPITCSETPTVSQLVSKPHTPSLDEDGINLEEIREFAKN .: : .:. . :.:. . : . .:.::::.:.: . . ::.:::::::::: XP_011 LAHSQASMSQSPVRQASSSSSSS-SSSSALSVGQLVSNPQTAAGEVDGVNLEEIREFAKA 470 480 490 500 510 160 170 180 pF1KE3 FKIRRLSLGLTQTQVGQALTATEGPAYSQSAICR-------------------------- :::::::::::::::::::.:::::::::::::: XP_011 FKIRRLSLGLTQTQVGQALSATEGPAYSQSAICRHTILRSHFFLPQEAQENTIASSLTAK 520 530 540 550 560 570 190 200 210 220 230 pF1KE3 ----------FEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKR :::::::::::::.:::::.:. ::: :.. :.::: ::.:.:::::::: XP_011 LNPGLLYPARFEKLDITPKSAQKIKPVLERWMAEAEARHRAGMQNLTEFIGSEPSKKRKR 580 590 600 610 620 630 240 250 260 270 280 290 pF1KE3 RTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKNTSKLNV ::::::::.: :::.:::: :.:::.::::..::::::::::::::.::.:::: : XP_011 RTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQALKNTIKRLK 640 650 660 670 680 690 300 pF1KE3 FQIP XP_011 QHEPATAVPLEPLTDSLEENS 700 710 720 >>NP_001116229 (OMIM: 173110,613038) pituitary-specific (317 aa) initn: 466 init1: 274 opt: 487 Z-score: 284.5 bits: 60.8 E(85289): 4.2e-09 Smith-Waterman score: 487; 35.4% identity (64.6% similar) in 291 aa overlap (19-296:22-303) 10 20 30 40 50 pF1KE3 MPGISSQILTNAQGQVIGTLPWVVN-SASVAAPAPAQSLQVQAVTPQLLLNAQGQ-- ::: ... ::. :. .. .:....:..: : NP_001 MSCQAFTSADTFIPLNSDASATLPLIMHHSAAECLPVSNHATNVMSTVPSILSLIQTPKC 10 20 30 40 50 60 60 70 80 90 100 pF1KE3 -----VIATLASSPLPPPVAVRKPSTPESPAKSEVQPIQPTPTVPQ-PAVVIASPAPAAK ..::... .: . ..:. :. . :: . . : ... : . NP_001 LCTHFSVTTLGNTATGLHYSVPSCHYGNQPSTYGVMAGSLTPCLYKFPDHTLSHGFPPIH 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE3 PSASAPIPITCS---ETPTVSQLVSKPHTPSLDEDGINLEEIREFAKNFKIRRLSLGLTQ : : . . : :.:: .: .: :. ...:...::..::.::..:: :: NP_001 QPLLAEDPTAADFKQELRRKSKLVEEP----IDMDSPEIRELEKFANEFKVRRIKLGYTQ 130 140 150 160 170 170 180 190 200 210 220 pF1KE3 TQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNLME :.::.::.:..: .::..:::::.:... :.: ::: .: :::.::: : : :.. NP_001 TNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAE---QVG--ALYN 180 190 200 210 220 230 230 240 250 260 270 280 pF1KE3 FVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNR : .::::::... : .::. .: .. :..::: ..:.::: ..:::::::::: NP_001 EKVGANERKRKRRTTISIAAKDALERHFGEQNKPSSQEIMRMAEELNLEKEVVRVWFCNR 240 250 260 270 280 290 290 300 pF1KE3 RQTLKNT-SKLNVFQIP :: : . ..:: NP_001 RQREKRVKTSLNQSLFSISKEHLECR 300 310 >>NP_000297 (OMIM: 173110,613038) pituitary-specific pos (291 aa) initn: 466 init1: 274 opt: 476 Z-score: 279.2 bits: 59.7 E(85289): 8.2e-09 Smith-Waterman score: 476; 43.1% identity (70.3% similar) in 209 aa overlap (89-296:82-277) 60 70 80 90 100 110 pF1KE3 LASSPLPPPVAVRKPSTPESPAKSEVQPIQPTPTVPQPAVVIASPAPAAKPSASAPIPIT : :. . : .: : :.:. NP_000 HYSVPSCHYGNQPSTYGVMAGSLTPCLYKFPDHTLSHGFPPIHQPLLAEDPTAAD----F 60 70 80 90 100 120 130 140 150 160 170 pF1KE3 CSETPTVSQLVSKPHTPSLDEDGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGP .: :.:: .: .: :. ...:...::..::.::..:: :::.::.::.:..: NP_000 KQELRRKSKLVEEP----IDMDSPEIRELEKFANEFKVRRIKLGYTQTNVGEALAAVHGS 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE3 AYSQSAICRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRR .::..:::::.:... :.: ::: .: :::.::: : : : ::.. .::::: NP_000 EFSQTTICRFENLQLSFKNACKLKAILSKWLEEAE---QVGAL-YNEKVGANE-RKRKRR 170 180 190 200 210 240 250 260 270 280 290 pF1KE3 TSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKNT-SKLNV :... : .::. .: .. :..::: ..:.::: ..:::::::::::: : . ..:: NP_000 TTISIAAKDALERHFGEQNKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVKTSLNQ 220 230 240 250 260 270 300 pF1KE3 FQIP NP_000 SLFSISKEHLECR 280 290 >>XP_011507957 (OMIM: 164175) PREDICTED: POU domain, cla (671 aa) initn: 477 init1: 250 opt: 481 Z-score: 276.9 bits: 60.4 E(85289): 1.1e-08 Smith-Waterman score: 481; 37.2% identity (64.3% similar) in 269 aa overlap (35-290:199-461) 10 20 30 40 50 60 pF1KE3 SSQILTNAQGQVIGTLPWVVNSASVAAPAPAQSLQVQAVTPQLLLNAQGQVIATLASSPL ::.:: : :: : : . . .. : XP_011 SQQHSAAGATISASAATPMTQIPLSQPIQIAQDLQQLQQLQQQNLNLQ-QFVLVHPTTNL 170 180 190 200 210 220 70 80 90 100 110 pF1KE3 PPP--VAVRKPSTPESPAKSE---VQ-PIQPTPTV--PQPAVVIAS-PAPAAKPSASAPI : . . :. .. ... .: : : .. ::.....: :: .. :..:: XP_011 QPAQFIISQTPQGQQGLLQAQNLLTQLPQQSQANLLQSQPSITLTSQPATPTRTIAATPI 230 240 250 260 270 280 120 130 140 150 160 170 pF1KE3 PITCSETPTVSQLVSKPHTPSLDEDGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTAT . : .. .. ::::.: . .:::...:::.:: ::..::.:: .:: :. XP_011 ----QTLPQSQSTPKRIDTPSLEEPS-DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKL 290 300 310 320 330 340 180 190 200 210 220 230 pF1KE3 EGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQ---QNLMEFVGGEP- : .::..: ::: :... :. ::::.::::::.:: ..... . .. : : XP_011 YGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGL 350 360 370 380 390 400 240 250 260 270 280 290 pF1KE3 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKN :..::.:::. . ::. : .: ::..::: :: .::...::.::::::::: : XP_011 SRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKR 410 420 430 440 450 460 300 pF1KE3 TSKLNVFQIP XP_011 INPPSSGGTSSSPIKAIFPSPTSLVATTPSLVTSSAATTLTVSPVLPLTSAAVTNLSVTG 470 480 490 500 510 520 >>XP_011507956 (OMIM: 164175) PREDICTED: POU domain, cla (743 aa) initn: 477 init1: 250 opt: 481 Z-score: 276.3 bits: 60.5 E(85289): 1.2e-08 Smith-Waterman score: 481; 37.2% identity (64.3% similar) in 269 aa overlap (35-290:173-435) 10 20 30 40 50 60 pF1KE3 SSQILTNAQGQVIGTLPWVVNSASVAAPAPAQSLQVQAVTPQLLLNAQGQVIATLASSPL ::.:: : :: : : . . .. : XP_011 SQQHSAAGATISASAATPMTQIPLSQPIQIAQDLQQLQQLQQQNLNLQ-QFVLVHPTTNL 150 160 170 180 190 200 70 80 90 100 110 pF1KE3 PPP--VAVRKPSTPESPAKSE---VQ-PIQPTPTV--PQPAVVIAS-PAPAAKPSASAPI : . . :. .. ... .: : : .. ::.....: :: .. :..:: XP_011 QPAQFIISQTPQGQQGLLQAQNLLTQLPQQSQANLLQSQPSITLTSQPATPTRTIAATPI 210 220 230 240 250 260 120 130 140 150 160 170 pF1KE3 PITCSETPTVSQLVSKPHTPSLDEDGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTAT . : .. .. ::::.: . .:::...:::.:: ::..::.:: .:: :. XP_011 ----QTLPQSQSTPKRIDTPSLEEPS-DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKL 270 280 290 300 310 180 190 200 210 220 230 pF1KE3 EGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQ---QNLMEFVGGEP- : .::..: ::: :... :. ::::.::::::.:: ..... . .. : : XP_011 YGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGL 320 330 340 350 360 370 240 250 260 270 280 290 pF1KE3 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKN :..::.:::. . ::. : .: ::..::: :: .::...::.::::::::: : XP_011 SRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKR 380 390 400 410 420 430 300 pF1KE3 TSKLNVFQIP XP_011 INPPSSGGTSSSPIKAIFPSPTSLVATTPSLVTSSAATTLTVSPVLPLTSAAVTNLSVTG 440 450 460 470 480 490 >>NP_001185712 (OMIM: 164175) POU domain, class 2, trans (755 aa) initn: 477 init1: 250 opt: 481 Z-score: 276.2 bits: 60.5 E(85289): 1.2e-08 Smith-Waterman score: 481; 37.2% identity (64.3% similar) in 269 aa overlap (35-290:185-447) 10 20 30 40 50 60 pF1KE3 SSQILTNAQGQVIGTLPWVVNSASVAAPAPAQSLQVQAVTPQLLLNAQGQVIATLASSPL ::.:: : :: : : . . .. : NP_001 SQQHSAAGATISASAATPMTQIPLSQPIQIAQDLQQLQQLQQQNLNLQ-QFVLVHPTTNL 160 170 180 190 200 210 70 80 90 100 110 pF1KE3 PPP--VAVRKPSTPESPAKSE---VQ-PIQPTPTV--PQPAVVIAS-PAPAAKPSASAPI : . . :. .. ... .: : : .. ::.....: :: .. :..:: NP_001 QPAQFIISQTPQGQQGLLQAQNLLTQLPQQSQANLLQSQPSITLTSQPATPTRTIAATPI 220 230 240 250 260 270 120 130 140 150 160 170 pF1KE3 PITCSETPTVSQLVSKPHTPSLDEDGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTAT . : .. .. ::::.: . .:::...:::.:: ::..::.:: .:: :. NP_001 ----QTLPQSQSTPKRIDTPSLEEPS-DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKL 280 290 300 310 320 180 190 200 210 220 230 pF1KE3 EGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQ---QNLMEFVGGEP- : .::..: ::: :... :. ::::.::::::.:: ..... . .. : : NP_001 YGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGL 330 340 350 360 370 380 240 250 260 270 280 290 pF1KE3 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKN :..::.:::. . ::. : .: ::..::: :: .::...::.::::::::: : NP_001 SRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKR 390 400 410 420 430 440 300 pF1KE3 TSKLNVFQIP NP_001 INPPSSGGTSSSPIKAIFPSPTSLVATTPSLVTSSAATTLTVSPVLPLTSAAVTNLSVTG 450 460 470 480 490 500 >>NP_002688 (OMIM: 164175) POU domain, class 2, transcri (766 aa) initn: 477 init1: 250 opt: 481 Z-score: 276.2 bits: 60.5 E(85289): 1.2e-08 Smith-Waterman score: 481; 37.2% identity (64.3% similar) in 269 aa overlap (35-290:196-458) 10 20 30 40 50 60 pF1KE3 SSQILTNAQGQVIGTLPWVVNSASVAAPAPAQSLQVQAVTPQLLLNAQGQVIATLASSPL ::.:: : :: : : . . .. : NP_002 SQQHSAAGATISASAATPMTQIPLSQPIQIAQDLQQLQQLQQQNLNLQ-QFVLVHPTTNL 170 180 190 200 210 220 70 80 90 100 110 pF1KE3 PPP--VAVRKPSTPESPAKSE---VQ-PIQPTPTV--PQPAVVIAS-PAPAAKPSASAPI : . . :. .. ... .: : : .. ::.....: :: .. :..:: NP_002 QPAQFIISQTPQGQQGLLQAQNLLTQLPQQSQANLLQSQPSITLTSQPATPTRTIAATPI 230 240 250 260 270 280 120 130 140 150 160 170 pF1KE3 PITCSETPTVSQLVSKPHTPSLDEDGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTAT . : .. .. ::::.: . .:::...:::.:: ::..::.:: .:: :. NP_002 ----QTLPQSQSTPKRIDTPSLEEPS-DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKL 290 300 310 320 330 180 190 200 210 220 230 pF1KE3 EGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQ---QNLMEFVGGEP- : .::..: ::: :... :. ::::.::::::.:: ..... . .. : : NP_002 YGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGL 340 350 360 370 380 390 240 250 260 270 280 290 pF1KE3 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKN :..::.:::. . ::. : .: ::..::: :: .::...::.::::::::: : NP_002 SRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKR 400 410 420 430 440 450 300 pF1KE3 TSKLNVFQIP NP_002 INPPSSGGTSSSPIKAIFPSPTSLVATTPSLVTSSAATTLTVSPVLPLTSAAVTNLSVTG 460 470 480 490 500 510 >>XP_011507955 (OMIM: 164175) PREDICTED: POU domain, cla (769 aa) initn: 477 init1: 250 opt: 481 Z-score: 276.1 bits: 60.5 E(85289): 1.2e-08 Smith-Waterman score: 481; 37.2% identity (64.3% similar) in 269 aa overlap (35-290:199-461) 10 20 30 40 50 60 pF1KE3 SSQILTNAQGQVIGTLPWVVNSASVAAPAPAQSLQVQAVTPQLLLNAQGQVIATLASSPL ::.:: : :: : : . . .. : XP_011 SQQHSAAGATISASAATPMTQIPLSQPIQIAQDLQQLQQLQQQNLNLQ-QFVLVHPTTNL 170 180 190 200 210 220 70 80 90 100 110 pF1KE3 PPP--VAVRKPSTPESPAKSE---VQ-PIQPTPTV--PQPAVVIAS-PAPAAKPSASAPI : . . :. .. ... .: : : .. ::.....: :: .. :..:: XP_011 QPAQFIISQTPQGQQGLLQAQNLLTQLPQQSQANLLQSQPSITLTSQPATPTRTIAATPI 230 240 250 260 270 280 120 130 140 150 160 170 pF1KE3 PITCSETPTVSQLVSKPHTPSLDEDGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTAT . : .. .. ::::.: . .:::...:::.:: ::..::.:: .:: :. XP_011 ----QTLPQSQSTPKRIDTPSLEEPS-DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKL 290 300 310 320 330 340 180 190 200 210 220 230 pF1KE3 EGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQ---QNLMEFVGGEP- : .::..: ::: :... :. ::::.::::::.:: ..... . .. : : XP_011 YGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGL 350 360 370 380 390 400 240 250 260 270 280 290 pF1KE3 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKN :..::.:::. . ::. : .: ::..::: :: .::...::.::::::::: : XP_011 SRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKR 410 420 430 440 450 460 300 pF1KE3 TSKLNVFQIP XP_011 INPPSSGGTSSSPIKAIFPSPTSLVATTPSLVTSSAATTLTVSPVLPLTSAAVTNLSVTG 470 480 490 500 510 520 301 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:34:27 2016 done: Sun Nov 6 06:34:28 2016 Total Scan time: 7.300 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]