FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1788, 295 aa 1>>>pF1KE1788 295 - 295 aa - 295 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6856+/-0.000809; mu= 19.3180+/- 0.048 mean_var=67.0476+/-13.580, 0's: 0 Z-trim(107.9): 15 B-trim: 61 in 1/51 Lambda= 0.156633 statistics sampled from 9848 (9858) to 9848 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.303), width: 16 Scan time: 2.320 The best scores are: opt bits E(32554) CCDS44875.1 TMBIM6 gene_id:7009|Hs108|chr12 ( 295) 1980 456.0 1.5e-128 CCDS31797.1 TMBIM6 gene_id:7009|Hs108|chr12 ( 237) 1555 359.9 1.1e-99 >>CCDS44875.1 TMBIM6 gene_id:7009|Hs108|chr12 (295 aa) initn: 1980 init1: 1980 opt: 1980 Z-score: 2421.3 bits: 456.0 E(32554): 1.5e-128 Smith-Waterman score: 1980; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295) 10 20 30 40 50 60 pF1KE1 MSHSSVTREAPQLLSQRQRREVRGVWGWGCLPGPRGGPALFGLVTFGQSGDCCTDSGTMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MSHSSVTREAPQLLSQRQRREVRGVWGWGCLPGPRGGPALFGLVTFGQSGDCCTDSGTMN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHMVTHFIQAGLLSAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 IFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHMVTHFIQAGLLSAL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GSLILMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALEFCIAVNPSILPTAFMGTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 GSLILMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALEFCIAVNPSILPTAFMGTA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 MIFTCFTLSALYARRRSYLFLGGILMSALSLLLLSSLGNVFFGSIWLFQANLYVGLVVMC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MIFTCFTLSALYARRRSYLFLGGILMSALSLLLLSSLGNVFFGSIWLFQANLYVGLVVMC 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 GFVLFDTQLIIEKAEHGDQDYIWHCIDLFLDFITVFRKLMMILAMNEKDKKKEKK ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 GFVLFDTQLIIEKAEHGDQDYIWHCIDLFLDFITVFRKLMMILAMNEKDKKKEKK 250 260 270 280 290 >>CCDS31797.1 TMBIM6 gene_id:7009|Hs108|chr12 (237 aa) initn: 1555 init1: 1555 opt: 1555 Z-score: 1903.5 bits: 359.9 E(32554): 1.1e-99 Smith-Waterman score: 1555; 100.0% identity (100.0% similar) in 237 aa overlap (59-295:1-237) 30 40 50 60 70 80 pF1KE1 GCLPGPRGGPALFGLVTFGQSGDCCTDSGTMNIFDRKINFDALLKFSHITPSTQQHLKKV :::::::::::::::::::::::::::::: CCDS31 MNIFDRKINFDALLKFSHITPSTQQHLKKV 10 20 30 90 100 110 120 130 140 pF1KE1 YASFALCMFVAAAGAYVHMVTHFIQAGLLSALGSLILMIWLMATPHSHETEQKRLGLLAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 YASFALCMFVAAAGAYVHMVTHFIQAGLLSALGSLILMIWLMATPHSHETEQKRLGLLAG 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE1 FAFLTGVGLGPALEFCIAVNPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 FAFLTGVGLGPALEFCIAVNPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSA 100 110 120 130 140 150 210 220 230 240 250 260 pF1KE1 LSLLLLSSLGNVFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAEHGDQDYIWHCIDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 LSLLLLSSLGNVFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAEHGDQDYIWHCIDL 160 170 180 190 200 210 270 280 290 pF1KE1 FLDFITVFRKLMMILAMNEKDKKKEKK ::::::::::::::::::::::::::: CCDS31 FLDFITVFRKLMMILAMNEKDKKKEKK 220 230 295 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 12:29:55 2016 done: Sun Nov 6 12:29:55 2016 Total Scan time: 2.320 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]