Result of FASTA (omim) for
pFN21AE1100
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1100, 305 aa
1>>>pF1KE1100 305 - 305 aa - 305 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0425+/-0.000374; mu= 9.3312+/- 0.024
mean_var=160.3023+/-32.444, 0's: 0 Z-trim(118.3): 235 B-trim: 0 in 0/53
Lambda= 0.101299
statistics sampled from 30735 (31021) to 30735 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.364), width: 16
Scan time: 7.930
The best scores are: opt bits E(85289)
NP_079141 (OMIM: 607937) homeobox protein NANOG is ( 305) 2118 321.1 1.8e-87
XP_011519152 (OMIM: 607937) PREDICTED: homeobox pr ( 304) 2100 318.4 1.1e-86
XP_011519154 (OMIM: 607937) PREDICTED: homeobox pr ( 181) 1288 199.6 4e-51
NP_001284627 (OMIM: 607937) homeobox protein NANOG ( 289) 1260 195.7 9.4e-50
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 250 48.2 3.5e-05
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 250 48.2 3.5e-05
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 250 48.2 3.5e-05
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 250 48.2 3.5e-05
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 250 48.2 3.5e-05
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 250 48.2 3.5e-05
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 250 48.2 3.5e-05
NP_005213 (OMIM: 600030) homeobox protein DLX-6 [H ( 293) 239 46.5 7.9e-05
NP_064448 (OMIM: 605211) barH-like 1 homeobox prot ( 327) 239 46.5 8.5e-05
NP_005212 (OMIM: 220600,600028) homeobox protein D ( 289) 232 45.4 0.00016
NP_835221 (OMIM: 600029) homeobox protein DLX-1 is ( 255) 231 45.2 0.00016
NP_004396 (OMIM: 126255) homeobox protein DLX-2 [H ( 328) 232 45.5 0.00017
XP_016867292 (OMIM: 220600,600028) PREDICTED: home ( 161) 226 44.3 0.00019
XP_005250242 (OMIM: 220600,600028) PREDICTED: home ( 161) 226 44.3 0.00019
XP_016879780 (OMIM: 601911,616788) PREDICTED: home ( 168) 223 43.9 0.00027
NP_001925 (OMIM: 601911,616788) homeobox protein D ( 168) 223 43.9 0.00027
NP_612138 (OMIM: 601911,616788) homeobox protein D ( 240) 225 44.3 0.00028
NP_066305 (OMIM: 604640) T-cell leukemia homeobox ( 291) 223 44.1 0.0004
NP_005211 (OMIM: 104510,190320,600525) homeobox pr ( 287) 222 44.0 0.00043
NP_001091639 (OMIM: 611074) brain-specific homeobo ( 233) 220 43.6 0.00046
XP_011541345 (OMIM: 604823) PREDICTED: homeobox pr ( 233) 218 43.3 0.00056
NP_003649 (OMIM: 604823) homeobox protein BarH-lik ( 279) 218 43.4 0.00064
NP_005512 (OMIM: 186770) T-cell leukemia homeobox ( 330) 219 43.6 0.00065
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 219 43.6 0.00069
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 219 43.6 0.00069
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 219 43.7 0.00079
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 219 43.7 0.00079
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 219 43.7 0.00079
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 219 43.7 0.00079
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 219 43.7 0.00079
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 219 43.7 0.00079
XP_011538046 (OMIM: 186770) PREDICTED: T-cell leuk ( 342) 217 43.3 0.00082
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 217 43.4 0.00096
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 219 43.8 0.00097
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 219 43.8 0.00097
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 219 43.8 0.00097
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 219 43.8 0.00097
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 219 43.8 0.00097
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 219 43.8 0.00097
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 219 43.8 0.00097
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 219 43.8 0.00097
NP_001243268 (OMIM: 602041) homeobox protein Nkx-3 ( 159) 209 41.8 0.0011
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 213 42.7 0.0011
NP_002440 (OMIM: 123101,168500,168550,604757) home ( 267) 212 42.5 0.0011
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 213 42.9 0.0016
NP_064447 (OMIM: 605212) barH-like 2 homeobox prot ( 387) 211 42.5 0.0016
>>NP_079141 (OMIM: 607937) homeobox protein NANOG isofor (305 aa)
initn: 2118 init1: 2118 opt: 2118 Z-score: 1691.5 bits: 321.1 E(85289): 1.8e-87
Smith-Waterman score: 2118; 99.3% identity (100.0% similar) in 305 aa overlap (1-305:1-305)
10 20 30 40 50 60
pF1KE1 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LIQDSPDSSTSPKGKQPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL
:::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
NP_079 LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 YNCGEESLQSCMHFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
NP_079 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM
250 260 270 280 290 300
pF1KE1 QPEDV
:::::
NP_079 QPEDV
>>XP_011519152 (OMIM: 607937) PREDICTED: homeobox protei (304 aa)
initn: 1452 init1: 1131 opt: 2100 Z-score: 1677.3 bits: 318.4 E(85289): 1.1e-86
Smith-Waterman score: 2100; 99.0% identity (99.7% similar) in 305 aa overlap (1-305:1-304)
10 20 30 40 50 60
pF1KE1 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LIQDSPDSSTSPKGKQPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL
:::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
XP_011 LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS
::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
XP_011 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQ-ASAPTYPSLYSS
130 140 150 160 170
190 200 210 220 230 240
pF1KE1 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE1 YNCGEESLQSCMHFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM
240 250 260 270 280 290
pF1KE1 QPEDV
:::::
XP_011 QPEDV
300
>>XP_011519154 (OMIM: 607937) PREDICTED: homeobox protei (181 aa)
initn: 1288 init1: 1288 opt: 1288 Z-score: 1038.9 bits: 199.6 E(85289): 4e-51
Smith-Waterman score: 1288; 99.4% identity (100.0% similar) in 181 aa overlap (125-305:1-181)
100 110 120 130 140 150
pF1KE1 KQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ
::::::::::::::::::::::::::::::
XP_011 MQELSNILNLSYKQVKTWFQNQRMKSKRWQ
10 20 30
160 170 180 190 200 210
pF1KE1 KNNWPKNSNGVTQKASAPTYPSLYSSYHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KNNWPKNSNGVTQKASAPTYPSLYSSYHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQ
40 50 60 70 80 90
220 230 240 250 260 270
pF1KE1 SWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMHFQPNSPASDLEAALEAAGEGL
::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
XP_011 SWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMQFQPNSPASDLEAALEAAGEGL
100 110 120 130 140 150
280 290 300
pF1KE1 NVIQQTTRYFSTPQTMDLFLNYSMNMQPEDV
:::::::::::::::::::::::::::::::
XP_011 NVIQQTTRYFSTPQTMDLFLNYSMNMQPEDV
160 170 180
>>NP_001284627 (OMIM: 607937) homeobox protein NANOG iso (289 aa)
initn: 1451 init1: 1130 opt: 1260 Z-score: 1014.2 bits: 195.7 E(85289): 9.4e-50
Smith-Waterman score: 1969; 94.1% identity (94.8% similar) in 305 aa overlap (1-305:1-289)
10 20 30 40 50 60
pF1KE1 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LIQDSPDSSTSPKGKQPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL
:::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
NP_001 LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQ-------------
130 140 150 160
190 200 210 220 230 240
pF1KE1 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ---GCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE1 YNCGEESLQSCMHFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM
230 240 250 260 270 280
pF1KE1 QPEDV
:::::
NP_001 QPEDV
>>XP_005249788 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 181 init1: 181 opt: 250 Z-score: 214.1 bits: 48.2 E(85289): 3.5e-05
Smith-Waterman score: 250; 31.3% identity (57.1% similar) in 198 aa overlap (5-194:102-291)
10 20 30
pF1KE1 MSVDPACPQSLPCFEASDCKESSPMPVICGPEEN
: :: : : ..: : :
XP_005 LRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPT--PAAPPP----PSSA
80 90 100 110 120
40 50 60 70 80 90
pF1KE1 YPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSSTSPKG-KQPTSAENSVAKKE-DKVP
: . :. : . . ::: .: . : : . : .. :: ::. .: . :: :
XP_005 SPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSP
130 140 150 160 170 180
100 110 120 130 140
pF1KE1 ---VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMK
......::...:.:: :. .:. ..:: . :..:.:::. .:.: ::::.:::
XP_005 PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK
190 200 210 220 230 240
150 160 170 180 190 200
pF1KE1 SKRWQKNNWPKNSNGVTQKASAPTYPS---LYSSYHQGCLVNPTGNLPMWSNQTWNNSTW
:. ::.. .:.: . . .:. :. .:.:. ::: . :
XP_005 YKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHS--LVNSVPYEPQSPPPFSKPPQG
250 260 270 280 290 300
210 220 230 240 250 260
pF1KE1 SNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMHFQPNSPASDLEAA
XP_005 TYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGS
310 320 330 340 350 360
>>XP_005249787 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 181 init1: 181 opt: 250 Z-score: 214.1 bits: 48.2 E(85289): 3.5e-05
Smith-Waterman score: 250; 31.3% identity (57.1% similar) in 198 aa overlap (5-194:102-291)
10 20 30
pF1KE1 MSVDPACPQSLPCFEASDCKESSPMPVICGPEEN
: :: : : ..: : :
XP_005 LRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPT--PAAPPP----PSSA
80 90 100 110 120
40 50 60 70 80 90
pF1KE1 YPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSSTSPKG-KQPTSAENSVAKKE-DKVP
: . :. : . . ::: .: . : : . : .. :: ::. .: . :: :
XP_005 SPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSP
130 140 150 160 170 180
100 110 120 130 140
pF1KE1 ---VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMK
......::...:.:: :. .:. ..:: . :..:.:::. .:.: ::::.:::
XP_005 PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK
190 200 210 220 230 240
150 160 170 180 190 200
pF1KE1 SKRWQKNNWPKNSNGVTQKASAPTYPS---LYSSYHQGCLVNPTGNLPMWSNQTWNNSTW
:. ::.. .:.: . . .:. :. .:.:. ::: . :
XP_005 YKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHS--LVNSVPYEPQSPPPFSKPPQG
250 260 270 280 290 300
210 220 230 240 250 260
pF1KE1 SNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMHFQPNSPASDLEAA
XP_005 TYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGS
310 320 330 340 350 360
>>XP_006715778 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 181 init1: 181 opt: 250 Z-score: 214.1 bits: 48.2 E(85289): 3.5e-05
Smith-Waterman score: 250; 31.3% identity (57.1% similar) in 198 aa overlap (5-194:102-291)
10 20 30
pF1KE1 MSVDPACPQSLPCFEASDCKESSPMPVICGPEEN
: :: : : ..: : :
XP_006 LRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPT--PAAPPP----PSSA
80 90 100 110 120
40 50 60 70 80 90
pF1KE1 YPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSSTSPKG-KQPTSAENSVAKKE-DKVP
: . :. : . . ::: .: . : : . : .. :: ::. .: . :: :
XP_006 SPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSP
130 140 150 160 170 180
100 110 120 130 140
pF1KE1 ---VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMK
......::...:.:: :. .:. ..:: . :..:.:::. .:.: ::::.:::
XP_006 PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK
190 200 210 220 230 240
150 160 170 180 190 200
pF1KE1 SKRWQKNNWPKNSNGVTQKASAPTYPS---LYSSYHQGCLVNPTGNLPMWSNQTWNNSTW
:. ::.. .:.: . . .:. :. .:.:. ::: . :
XP_006 YKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHS--LVNSVPYEPQSPPPFSKPPQG
250 260 270 280 290 300
210 220 230 240 250 260
pF1KE1 SNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMHFQPNSPASDLEAA
XP_006 TYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGS
310 320 330 340 350 360
>>NP_705895 (OMIM: 142954) homeobox protein Hox-A3 isofo (443 aa)
initn: 181 init1: 181 opt: 250 Z-score: 214.1 bits: 48.2 E(85289): 3.5e-05
Smith-Waterman score: 250; 31.3% identity (57.1% similar) in 198 aa overlap (5-194:102-291)
10 20 30
pF1KE1 MSVDPACPQSLPCFEASDCKESSPMPVICGPEEN
: :: : : ..: : :
NP_705 LRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPT--PAAPPP----PSSA
80 90 100 110 120
40 50 60 70 80 90
pF1KE1 YPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSSTSPKG-KQPTSAENSVAKKE-DKVP
: . :. : . . ::: .: . : : . : .. :: ::. .: . :: :
NP_705 SPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSP
130 140 150 160 170 180
100 110 120 130 140
pF1KE1 ---VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMK
......::...:.:: :. .:. ..:: . :..:.:::. .:.: ::::.:::
NP_705 PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK
190 200 210 220 230 240
150 160 170 180 190 200
pF1KE1 SKRWQKNNWPKNSNGVTQKASAPTYPS---LYSSYHQGCLVNPTGNLPMWSNQTWNNSTW
:. ::.. .:.: . . .:. :. .:.:. ::: . :
NP_705 YKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHS--LVNSVPYEPQSPPPFSKPPQG
250 260 270 280 290 300
210 220 230 240 250 260
pF1KE1 SNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMHFQPNSPASDLEAA
NP_705 TYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGS
310 320 330 340 350 360
>>XP_005249789 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 181 init1: 181 opt: 250 Z-score: 214.1 bits: 48.2 E(85289): 3.5e-05
Smith-Waterman score: 250; 31.3% identity (57.1% similar) in 198 aa overlap (5-194:102-291)
10 20 30
pF1KE1 MSVDPACPQSLPCFEASDCKESSPMPVICGPEEN
: :: : : ..: : :
XP_005 LRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPT--PAAPPP----PSSA
80 90 100 110 120
40 50 60 70 80 90
pF1KE1 YPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSSTSPKG-KQPTSAENSVAKKE-DKVP
: . :. : . . ::: .: . : : . : .. :: ::. .: . :: :
XP_005 SPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSP
130 140 150 160 170 180
100 110 120 130 140
pF1KE1 ---VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMK
......::...:.:: :. .:. ..:: . :..:.:::. .:.: ::::.:::
XP_005 PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK
190 200 210 220 230 240
150 160 170 180 190 200
pF1KE1 SKRWQKNNWPKNSNGVTQKASAPTYPS---LYSSYHQGCLVNPTGNLPMWSNQTWNNSTW
:. ::.. .:.: . . .:. :. .:.:. ::: . :
XP_005 YKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHS--LVNSVPYEPQSPPPFSKPPQG
250 260 270 280 290 300
210 220 230 240 250 260
pF1KE1 SNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMHFQPNSPASDLEAA
XP_005 TYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGS
310 320 330 340 350 360
>>XP_011513645 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 181 init1: 181 opt: 250 Z-score: 214.1 bits: 48.2 E(85289): 3.5e-05
Smith-Waterman score: 250; 31.3% identity (57.1% similar) in 198 aa overlap (5-194:102-291)
10 20 30
pF1KE1 MSVDPACPQSLPCFEASDCKESSPMPVICGPEEN
: :: : : ..: : :
XP_011 LRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPT--PAAPPP----PSSA
80 90 100 110 120
40 50 60 70 80 90
pF1KE1 YPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSSTSPKG-KQPTSAENSVAKKE-DKVP
: . :. : . . ::: .: . : : . : .. :: ::. .: . :: :
XP_011 SPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSP
130 140 150 160 170 180
100 110 120 130 140
pF1KE1 ---VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMK
......::...:.:: :. .:. ..:: . :..:.:::. .:.: ::::.:::
XP_011 PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK
190 200 210 220 230 240
150 160 170 180 190 200
pF1KE1 SKRWQKNNWPKNSNGVTQKASAPTYPS---LYSSYHQGCLVNPTGNLPMWSNQTWNNSTW
:. ::.. .:.: . . .:. :. .:.:. ::: . :
XP_011 YKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHS--LVNSVPYEPQSPPPFSKPPQG
250 260 270 280 290 300
210 220 230 240 250 260
pF1KE1 SNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMHFQPNSPASDLEAA
XP_011 TYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGS
310 320 330 340 350 360
305 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 12:31:09 2016 done: Sun Nov 6 12:31:11 2016
Total Scan time: 7.930 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]