FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1100, 305 aa
  1>>>pF1KE1100 305 - 305 aa - 305 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1108+/-0.00089; mu= 8.7159+/- 0.054
 mean_var=141.8521+/-29.849, 0's: 0 Z-trim(110.7): 170  B-trim: 577 in 2/49
 Lambda= 0.107685
 statistics sampled from 11585 (11778) to 11585 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.362), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS31736.1 NANOG gene_id:79923|Hs108|chr12        ( 305) 2118 340.2 1.2e-93
CCDS73436.1 NANOG gene_id:79923|Hs108|chr12        ( 289) 1260 206.9 1.5e-53


>>CCDS31736.1 NANOG gene_id:79923|Hs108|chr12             (305 aa)
 initn: 2118 init1: 2118 opt: 2118  Z-score: 1794.8  bits: 340.2 E(32554): 1.2e-93
Smith-Waterman score: 2118; 99.3% identity (100.0% similar) in 305 aa overlap (1-305:1-305)

               10        20        30        40        50        60
pF1KE1 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LIQDSPDSSTSPKGKQPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL
       :::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
CCDS31 LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 YNCGEESLQSCMHFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM
       ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM
              250       260       270       280       290       300

            
pF1KE1 QPEDV
       :::::
CCDS31 QPEDV
            

>>CCDS73436.1 NANOG gene_id:79923|Hs108|chr12             (289 aa)
 initn: 1451 init1: 1130 opt: 1260  Z-score: 1074.7  bits: 206.9 E(32554): 1.5e-53
Smith-Waterman score: 1969; 94.1% identity (94.8% similar) in 305 aa overlap (1-305:1-289)

               10        20        30        40        50        60
pF1KE1 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LIQDSPDSSTSPKGKQPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL
       :::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
CCDS73 LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS
       :::::::::::::::::::::::::::::::::::::::::::::::             
CCDS73 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQ-------------
              130       140       150       160                    

              190       200       210       220       230       240
pF1KE1 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ---GCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF
          170       180       190       200       210       220    

              250       260       270       280       290       300
pF1KE1 YNCGEESLQSCMHFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM
       ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM
          230       240       250       260       270       280    

            
pF1KE1 QPEDV
       :::::
CCDS73 QPEDV
            




305 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:31:09 2016 done: Sun Nov  6 12:31:09 2016
 Total Scan time:  2.610 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]