FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7596, 292 aa
  1>>>pF1KB7596 292 - 292 aa - 292 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0840+/-0.000636; mu= 8.2520+/- 0.039
 mean_var=117.0105+/-23.435, 0's: 0 Z-trim(114.7): 66  B-trim: 0 in 0/52
 Lambda= 0.118566
 statistics sampled from 15205 (15271) to 15205 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.469), width:  16
 Scan time:  2.240

The best scores are:                                      opt bits E(32554)
CCDS31688.1 FOXR1 gene_id:283150|Hs108|chr11       ( 292) 2006 353.2 1.4e-97
CCDS35308.1 FOXR2 gene_id:139628|Hs108|chrX        ( 311) 1103 198.7 4.5e-51
CCDS9126.2 FOXN4 gene_id:121643|Hs108|chr12        ( 517)  339 68.1 1.5e-11


>>CCDS31688.1 FOXR1 gene_id:283150|Hs108|chr11            (292 aa)
 initn: 2006 init1: 2006 opt: 2006  Z-score: 1865.6  bits: 353.2 E(32554): 1.4e-97
Smith-Waterman score: 2006; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:1-292)

               10        20        30        40        50        60
pF1KB7 MGNELFLAFTTSHLPLAEQKLARYKLRIVKPPKLPLEKKPNPDKDGPDYEPNLWMWVNPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MGNELFLAFTTSHLPLAEQKLARYKLRIVKPPKLPLEKKPNPDKDGPDYEPNLWMWVNPN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IVYPPGKLEVSGRRKREDLTSTLPSSQPPQKEEDASCSEAAGVESLSQSSSKRSPPRKRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IVYPPGKLEVSGRRKREDLTSTLPSSQPPQKEEDASCSEAAGVESLSQSSSKRSPPRKRF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 AFSPSTWELTEEEEAEDQEDSSSMALPSPHKRAPLQSRRLRQASSQAGRLWSRPPLNYFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AFSPSTWELTEEEEAEDQEDSSSMALPSPHKRAPLQSRRLRQASSQAGRLWSRPPLNYFH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 LIALALRNSSPCGLNVQQIYSFTRKHFPFFRTAPEGWKNTVRHNLCFRDSFEKVPVSMQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LIALALRNSSPCGLNVQQIYSFTRKHFPFFRTAPEGWKNTVRHNLCFRDSFEKVPVSMQG
              190       200       210       220       230       240

              250       260       270       280       290  
pF1KB7 GASTRPRSCLWKLTEEGHRRFAEEARALASTRLESIQQCMSQPDVMPFLFDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GASTRPRSCLWKLTEEGHRRFAEEARALASTRLESIQQCMSQPDVMPFLFDL
              250       260       270       280       290  

>>CCDS35308.1 FOXR2 gene_id:139628|Hs108|chrX             (311 aa)
 initn: 1111 init1: 595 opt: 1103  Z-score: 1030.4  bits: 198.7 E(32554): 4.5e-51
Smith-Waterman score: 1103; 56.8% identity (78.1% similar) in 292 aa overlap (1-292:26-311)

                                        10        20        30     
pF1KB7                          MGNELFLAFTTSHLPLAEQKLARYKLRIVKPPKLP
                                : :::::  ::..  :::: ::.:.. ..:::..:
CCDS35 MDLKLKDCEFWYSLHGQVPGLLDWDMRNELFLPCTTDQCSLAEQILAKYRVGVMKPPEMP
               10        20        30        40        50        60

          40        50        60        70        80        90     
pF1KB7 LEKKPNPDKDGPDYEPNLWMWVNPNIVYPPGKLEVSGRRKREDLTSTLPSSQPPQKEEDA
        ...:.:: :::  ::::::::.:::. : :. :.     .::::.  :  :::::.: .
CCDS35 QKRRPSPDGDGPPCEPNLWMWVDPNILCPLGSQEAPKPSGKEDLTNISPFPQPPQKDEGS
               70        80        90       100       110       120

         100       110       120       130       140       150     
pF1KB7 SCSEAAGVESLSQSSSKRSPPRKRFAFSPSTWELTEEEEAEDQEDSSSMALPSPHKRAPL
       .:::   :::: .:::..:: .:.   ::: .:::::: ::. .:.:   : ::. .   
CCDS35 NCSEDKVVESLPSSSSEQSPLQKQGIHSPSDFELTEEE-AEEPDDNS---LQSPEMKC-Y
              130       140       150        160          170      

         160       170       180       190       200       210     
pF1KB7 QSRRLRQASSQAGRLWSRPPLNYFHLIALALRNSSPCGLNVQQIYSFTRKHFPFFRTAPE
       ::..: : ..:  . :.:::::  :::::::::.  :::.::.::.:::.::::: :::.
CCDS35 QSQKLWQINNQE-KSWQRPPLNCSHLIALALRNNPHCGLSVQEIYNFTRQHFPFFWTAPD
         180        190       200       210       220       230    

         220       230       240       250       260       270     
pF1KB7 GWKNTVRHNLCFRDSFEKVPVSMQGGASTRPRSCLWKLTEEGHRRFAEEARALASTRLES
       :::.:...:::: ::::::: :..   ..::::::::::.:::::: ::.:.:: .. : 
CCDS35 GWKSTIHYNLCFLDSFEKVPDSLKDEDNARPRSCLWKLTKEGHRRFWEETRVLAFAQRER
          240       250       260       270       280       290    

         280       290  
pF1KB7 IQQCMSQPDVMPFLFDL
       ::.:::::...  ::::
CCDS35 IQECMSQPELLTSLFDL
          300       310 

>>CCDS9126.2 FOXN4 gene_id:121643|Hs108|chr12             (517 aa)
 initn: 301 init1: 249 opt: 339  Z-score: 320.7  bits: 68.1 E(32554): 1.5e-11
Smith-Waterman score: 339; 32.8% identity (58.8% similar) in 204 aa overlap (83-284:107-301)

             60        70        80        90       100       110  
pF1KB7 LWMWVNPNIVYPPGKLEVSGRRKREDLTSTLPSSQPPQKEEDASCSEAAGVESLSQSSSK
                                     .:.  :   ..:.  .  .: .    ::. 
CCDS91 PGALAGVADLHVGATPSPLLHGPAGMAPRGMPGLGPITGHRDSMSQFPVGGQ---PSSGL
         80        90       100       110       120          130   

            120       130       140       150       160         170
pF1KB7 RSPPRKRFAFSPSTWELTEEEEAEDQEDSSSMALPSPHKRAPLQSRRLRQASSQA--GRL
       ..::.    .::.:        . .:    ..  :    : :  . ..   :::    . 
CCDS91 QDPPH---LYSPATQPQFPLPPGAQQCPPVGLYGPPFGVRPPYPQPHVAVHSSQELHPKH
              140       150       160       170       180       190

              180       190       200       210       220       230
pF1KB7 WSRPPLNYFHLIALALRNSSPCGLNVQQIYSFTRKHFPFFRTAPEGWKNTVRHNLCFRDS
       . .:  .:  :::.::.::.  .: :..:::: ..:::.:.:::.::::.::::: .   
CCDS91 YPKPIYSYSCLIAMALKNSKTGSLPVSEIYSFMKEHFPYFKTAPDGWKNSVRHNLSLNKC
              200       210       220       230       240       250

              240       250       260       270       280       290
pF1KB7 FEKVPVSMQGGASTRPRSCLWKLTEEGHRRFAEEARALASTRLESIQQCMSQPDVMPFLF
       ::::  .:.:  :.: ..::: :.     .. :: .      : .:.. :..:.      
CCDS91 FEKVENKMSG--SSR-KGCLWALNLARIDKMEEEMHKWKRKDLAAIHRSMANPEELDKLI
              260          270       280       290       300       

                                                                   
pF1KB7 DL                                                          
                                                                   
CCDS91 SDRPESCRRPGKPGEPEAPVLTHATTVAVAHGCLAVSQLPPQPLMTLSLQSVPLHHQVQP
       310       320       330       340       350       360       




292 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:31:47 2016 done: Sun Nov  6 05:31:48 2016
 Total Scan time:  2.240 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]