FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3054, 207 aa
  1>>>pF1KE3054 207 - 207 aa - 207 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4108+/-0.00059; mu= 14.7010+/- 0.036
 mean_var=81.0212+/-16.056, 0's: 0 Z-trim(113.7): 9  B-trim: 0 in 0/51
 Lambda= 0.142487
 statistics sampled from 14329 (14335) to 14329 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.44), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS31685.1 CD3E gene_id:916|Hs108|chr11           ( 207) 1442 304.9 2.3e-83


>>CCDS31685.1 CD3E gene_id:916|Hs108|chr11                (207 aa)
 initn: 1442 init1: 1442 opt: 1442  Z-score: 1610.0  bits: 304.9 E(32554): 2.3e-83
Smith-Waterman score: 1442; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)

               10        20        30        40        50        60
pF1KE3 MQSGTHWRVLGLCLLSVGVWGQDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MQSGTHWRVLGLCLLSVGVWGQDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 HNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRARVCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRARVCE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 NCMEMDVMSVATIVIVDICITGGLLLLVYYWSKNRKAKAKPVTRGAGAGGRQRGQNKERP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NCMEMDVMSVATIVIVDICITGGLLLLVYYWSKNRKAKAKPVTRGAGAGGRQRGQNKERP
              130       140       150       160       170       180

              190       200       
pF1KE3 PPVPNPDYEPIRKGQRDLYSGLNQRRI
       :::::::::::::::::::::::::::
CCDS31 PPVPNPDYEPIRKGQRDLYSGLNQRRI
              190       200       




207 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:32:27 2016 done: Sun Nov  6 12:32:27 2016
 Total Scan time:  2.190 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]