FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6259, 241 aa 1>>>pF1KE6259 241 - 241 aa - 241 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6288+/-0.000353; mu= 12.6924+/- 0.022 mean_var=69.7065+/-13.675, 0's: 0 Z-trim(113.6): 4 B-trim: 42 in 1/51 Lambda= 0.153616 statistics sampled from 23043 (23045) to 23043 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.27), width: 16 Scan time: 5.310 The best scores are: opt bits E(85289) NP_065696 (OMIM: 613125) nuclear receptor-interact ( 241) 1569 356.6 2.2e-98 >>NP_065696 (OMIM: 613125) nuclear receptor-interacting (241 aa) initn: 1569 init1: 1569 opt: 1569 Z-score: 1887.3 bits: 356.6 E(85289): 2.2e-98 Smith-Waterman score: 1569; 100.0% identity (100.0% similar) in 241 aa overlap (1-241:1-241) 10 20 30 40 50 60 pF1KE6 MFYSGLLTEGGRKETDMREAASLRQQRRMKQAVQFIHKDSADLLPLDGLKKLGSSKDMQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 MFYSGLLTEGGRKETDMREAASLRQQRRMKQAVQFIHKDSADLLPLDGLKKLGSSKDMQP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 HNILQRRLMETNLSKLRSGPRVPWASKTNKLNQAKSEGLKKSEEDDMILVSCQCAGKDVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 HNILQRRLMETNLSKLRSGPRVPWASKTNKLNQAKSEGLKKSEEDDMILVSCQCAGKDVK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 ALVDTGCLYNLISLACVDRLGLKEHVKSHKHEGEKLSLPRHLKVVGQIEHLVITLGSLRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 ALVDTGCLYNLISLACVDRLGLKEHVKSHKHEGEKLSLPRHLKVVGQIEHLVITLGSLRL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 DCPAAVVDDNEKNLSLGLQTLRSLKCIINLDKHRLIMGKTDKEEIPFVETVSLNEDNTSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 DCPAAVVDDNEKNLSLGLQTLRSLKCIINLDKHRLIMGKTDKEEIPFVETVSLNEDNTSE 190 200 210 220 230 240 pF1KE6 A : NP_065 A 241 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:33:40 2016 done: Tue Nov 8 11:33:41 2016 Total Scan time: 5.310 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]