FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6259, 241 aa 1>>>pF1KE6259 241 - 241 aa - 241 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5130+/-0.000779; mu= 13.1661+/- 0.046 mean_var=62.1990+/-12.240, 0's: 0 Z-trim(106.8): 10 B-trim: 6 in 1/49 Lambda= 0.162623 statistics sampled from 9192 (9197) to 9192 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.283), width: 16 Scan time: 2.280 The best scores are: opt bits E(32554) CCDS31422.1 NRIP3 gene_id:56675|Hs108|chr11 ( 241) 1569 376.4 9.2e-105 CCDS8514.1 NRIP2 gene_id:83714|Hs108|chr12 ( 281) 391 100.1 1.7e-21 >>CCDS31422.1 NRIP3 gene_id:56675|Hs108|chr11 (241 aa) initn: 1569 init1: 1569 opt: 1569 Z-score: 1994.3 bits: 376.4 E(32554): 9.2e-105 Smith-Waterman score: 1569; 100.0% identity (100.0% similar) in 241 aa overlap (1-241:1-241) 10 20 30 40 50 60 pF1KE6 MFYSGLLTEGGRKETDMREAASLRQQRRMKQAVQFIHKDSADLLPLDGLKKLGSSKDMQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MFYSGLLTEGGRKETDMREAASLRQQRRMKQAVQFIHKDSADLLPLDGLKKLGSSKDMQP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 HNILQRRLMETNLSKLRSGPRVPWASKTNKLNQAKSEGLKKSEEDDMILVSCQCAGKDVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 HNILQRRLMETNLSKLRSGPRVPWASKTNKLNQAKSEGLKKSEEDDMILVSCQCAGKDVK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 ALVDTGCLYNLISLACVDRLGLKEHVKSHKHEGEKLSLPRHLKVVGQIEHLVITLGSLRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 ALVDTGCLYNLISLACVDRLGLKEHVKSHKHEGEKLSLPRHLKVVGQIEHLVITLGSLRL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 DCPAAVVDDNEKNLSLGLQTLRSLKCIINLDKHRLIMGKTDKEEIPFVETVSLNEDNTSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 DCPAAVVDDNEKNLSLGLQTLRSLKCIINLDKHRLIMGKTDKEEIPFVETVSLNEDNTSE 190 200 210 220 230 240 pF1KE6 A : CCDS31 A >>CCDS8514.1 NRIP2 gene_id:83714|Hs108|chr12 (281 aa) initn: 494 init1: 287 opt: 391 Z-score: 499.5 bits: 100.1 E(32554): 1.7e-21 Smith-Waterman score: 507; 42.2% identity (70.6% similar) in 218 aa overlap (13-228:69-273) 10 20 30 40 pF1KE6 MFYSGLLTEGGRKETDMREAASLRQQRRMKQAVQFIHKDSAD .:...:. : : ::::.:::.::.:::::: CCDS85 PSSPWPTPPAGAMSTKQEARRDEGEARTRGQEAQLRDRAHLSQQRRLKQATQFLHKDSAD 40 50 60 70 80 90 50 60 70 80 90 100 pF1KE6 LLPLDGLKKLGSSKDMQPHNILQRRLMETNLSKLRSGPRVPWASKTNKLNQAKSEGLKKS :::::.::.::.:::.::....::::.: : . :.. : : . . : ... :. .:. CCDS85 LLPLDSLKRLGTSKDLQPRSVIQRRLVEGNPNWLQGEP--P---RMQDLIHGQ-ESRRKT 100 110 120 130 140 150 110 120 130 140 150 160 pF1KE6 EEDDM--ILVSCQCAGKDVKALVDTGCLYNLISLACVDRLGLKEHVKSHKHEGEKLSLPR . .. .::.:.: . ... :::: :: :: .:..::::...: . . :. : CCDS85 SRTEIPALLVNCKCQDQLLRVAVDTGTQYNRISAGCLSRLGLEKRVLKAS-AGDLAPGPP 160 170 180 190 200 210 170 180 190 200 210 220 pF1KE6 HLKVVGQIEHLVITLGSLRLDCPAAVVDDNEKNLSLGLQTLRSLKCIINLDKHRLIMGKT :.:.: . ::. . : : ::: . .. :::::: :::: :.:. : .. :. CCDS85 T-----QVEQLELQLGQETVVCSAQVVDAESPEFCLGLQTLLSLKCCIDLE-HGVLRLKA 220 230 240 250 260 230 240 pF1KE6 DKEEIPFVETVSLNEDNTSEA :.::. CCDS85 PFSELPFLPLYQEPGQ 270 280 241 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:33:40 2016 done: Tue Nov 8 11:33:40 2016 Total Scan time: 2.280 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]