(Circular) (Six-base) MAPSORT of: pFN21AE5478.seq Check: 7924 from: 1 to: 5695 pFN21AE5478 5695 bp With 182 enzymes: SgfI * January 30, 2014 17:21 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3505 278 Size: 53 83 186 936 1969 2468 Fragments arranged by size: 2468 1969 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3038 1937 Size: 1101 4594 Acc65I G'GTAC_C Cuts at: 3016 3016 Size: 5695 AclI AA'CG_TT Cuts at: 1563 3822 4195 1563 Size: 2259 373 3063 Fragments arranged by size: 3063 2259 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2473 2627 3758 5142 5410 1632 Size: 841 154 1131 1384 268 1917 Fragments arranged by size: 1917 1384 1131 841 268 154 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5498 AflIII A'CryG_T Cuts at: 1203 4594 5571 1203 Size: 3391 977 1327 Fragments arranged by size: 3391 1327 977 AgeI A'CCGG_T Cuts at: 2415 4526 2415 Size: 2111 3584 AhdI GACnn_n'nnGTC Cuts at: 4424 4424 Size: 5695 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5695 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5695 AlwNI CAG_nnn'CTG Cuts at: 2128 3438 5010 2128 Size: 1310 1572 2813 Fragments arranged by size: 2813 1572 1310 ApaLI G'TGCA_C Cuts at: 3752 4908 3752 Size: 1156 4539 ApoI r'AATT_y Cuts at: 1493 3004 3230 3382 5491 1493 Size: 1511 226 152 2109 1697 Fragments arranged by size: 2109 1697 1511 226 152 AseI AT'TA_AT Cuts at: 160 1032 4249 160 Size: 872 3217 1606 Fragments arranged by size: 3217 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5695 AvaI C'yCGr_G Cuts at: 1870 1943 3020 1870 Size: 73 1077 4545 Fragments arranged by size: 4545 1077 73 BamHI G'GATC_C Cuts at: 3025 3392 3025 Size: 367 5328 BanI G'GyrC_C Cuts at: 618 943 1160 1787 3016 4471 618 Size: 325 217 627 1229 1455 1842 Fragments arranged by size: 1842 1455 1229 627 325 217 BanII G_rGCy'C Cuts at: 1391 2953 3014 1391 Size: 1562 61 4072 Fragments arranged by size: 4072 1562 61 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4724 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3886 3920 1903 Size: 34 1949 34 3678 Fragments arranged by size: 3678 1949 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3587 4797 3587 Size: 1210 4485 BclI T'GATC_A Cuts at: 1548 1548 Size: 5695 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2507 4306 136 Size: 107 122 71 631 605 835 1799 1525 Fragments arranged by size: 1799 1525 835 631 605 122 107 71 BglII A'GATC_T Cuts at: 2260 5690 2260 Size: 3430 2265 BlpI GC'TnA_GC Cuts at: 3112 3112 Size: 5695 Bme1580I G_kGCm'C Cuts at: 1790 2512 3756 4912 1790 Size: 722 1244 1156 2573 Fragments arranged by size: 2573 1244 1156 722 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5695 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2566 3426 4384 Size: 416 53 83 399 24 1149 860 958 Cuts at: 4384 442 Size: 1753 Fragments arranged by size: 1753 1149 958 860 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5695 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4355 1239 Size: 3116 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2274 2741 2947 3820 4685 4983 2274 Size: 467 206 873 865 298 2986 Fragments arranged by size: 2986 873 865 467 298 206 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4358 882 Size: 617 2859 2219 Fragments arranged by size: 2859 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3486 493 Size: 711 2282 2702 Fragments arranged by size: 2702 2282 711 BsaBI GATnn'nnATC Cuts at: 5689 5689 Size: 5695 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3502 3884 4519 275 Size: 53 83 186 936 1969 382 635 1451 Fragments arranged by size: 1969 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2415 4128 4526 4800 4947 5358 2415 Size: 1713 398 274 147 411 2752 Fragments arranged by size: 2752 1713 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5470 Fragments arranged by size: 5470 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5695 BseYI C'CCAG_C Cuts at: 4898 5394 4898 Size: 496 5199 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5122 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3145 3906 4934 1540 Size: 275 186 1144 761 1028 2301 Fragments arranged by size: 2301 1144 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3756 3841 4912 3756 Size: 85 1071 4539 Fragments arranged by size: 4539 1071 85 BsmI GAATG_Cn' Cuts at: 3206 3299 3206 Size: 93 5602 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2512 2953 3014 3756 3841 4912 1391 Size: 399 722 441 61 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 722 441 399 85 61 BspEI T'CCGG_A Cuts at: 5358 5358 Size: 5695 BspHI T'CATG_A Cuts at: 2457 3584 5314 2457 Size: 1127 1730 2838 Fragments arranged by size: 2838 1730 1127 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2983 3050 844 Size: 2139 67 3489 Fragments arranged by size: 3489 2139 67 BsrBI CCG'CTC Cuts at: 1394 1823 3582 1394 Size: 429 1759 3507 Fragments arranged by size: 3507 1759 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4190 4364 65 Size: 1183 2942 174 1396 Fragments arranged by size: 2942 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2415 4339 4526 1700 Size: 110 605 1924 187 2869 Fragments arranged by size: 2869 1924 605 187 110 BsrGI T'GTAC_A Cuts at: 96 2378 96 Size: 2282 3413 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5695 BssSI C'ACGA_G Cuts at: 3755 4767 3755 Size: 1012 4683 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5695 BstBI TT'CG_AA Cuts at: 4499 4499 Size: 5695 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5695 BstYI r'GATC_y Cuts at: 1972 2124 2260 3025 3392 3777 3794 5246 5332 Size: 152 136 765 367 385 17 1452 86 Cuts at: 5332 5344 5690 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 765 385 367 346 152 136 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 5143 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4956 Fragments arranged by size: 4956 683 56 BtsI GCAGTG_nn' Cuts at: 2406 3211 4005 4025 2406 Size: 805 794 20 4076 Fragments arranged by size: 4076 805 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5695 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 2643 2678 529 Size: 35 2079 35 3546 Fragments arranged by size: 3546 2079 35 35 DraI TTT'AAA Cuts at: 2999 2999 Size: 5695 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4702 809 Size: 507 3386 1802 Fragments arranged by size: 3386 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2499 2643 3142 Size: 54 1425 50 275 18 669 144 499 Cuts at: 3142 4031 5660 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 889 669 499 275 144 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3142 1537 Size: 275 1330 4090 Fragments arranged by size: 4090 1330 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2807 3625 1353 Size: 1454 818 3423 Fragments arranged by size: 3423 1454 818 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4282 4656 4802 387 Size: 1064 138 2693 374 146 1280 Fragments arranged by size: 2693 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2473 2627 3758 4355 5142 5410 1239 Size: 393 841 154 1131 597 787 268 1524 Fragments arranged by size: 1524 1131 841 787 597 393 268 154 EcoO109I rG'GnC_Cy Cuts at: 2493 2493 Size: 5695 EcoRI G'AATT_C Cuts at: 3004 3382 3004 Size: 378 5317 EcoRV GAT'ATC Cuts at: 2874 2874 Size: 5695 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2107 2107 Size: 5695 FspI TGC'GCA Cuts at: 4201 4201 Size: 5695 HaeII r_GCGC'y Cuts at: 1678 4842 1678 Size: 3164 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4336 4368 4410 4442 1373 Size: 32 135 32 2764 32 42 32 2626 Fragments arranged by size: 2764 2626 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 3039 3285 669 Size: 988 281 1101 246 3079 Fragments arranged by size: 3079 1101 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5695 HpaI GTT'AAC Cuts at: 3285 3285 Size: 5695 KpnI G_GTAC'C Cuts at: 3020 3020 Size: 5695 MfeI C'AATT_G Cuts at: 3294 3294 Size: 5695 MluI A'CGCG_T Cuts at: 5571 5571 Size: 5695 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4809 4993 1305 Size: 3504 184 2007 Fragments arranged by size: 3504 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2645 10 Size: 54 1425 343 813 3060 Fragments arranged by size: 3060 1425 813 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2225 2639 2828 3653 4012 4171 518 Size: 648 1059 414 189 825 359 159 2042 Fragments arranged by size: 2042 1059 825 648 414 359 189 159 MspA1I CmG'CkG Cuts at: 1606 2891 3111 3788 4936 5181 1606 Size: 1285 220 677 1148 245 2120 Fragments arranged by size: 2120 1285 1148 677 245 220 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 5143 NdeI CA'TA_TG Cuts at: 387 387 Size: 5695 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5695 NotI GC'GGCC_GC Cuts at: 3142 3142 Size: 5695 NspI r_CATG'y Cuts at: 1132 1229 2833 3053 4598 1132 Size: 97 1604 220 1545 2229 Fragments arranged by size: 2229 1604 1545 220 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5695 PciI A'CATG_T Cuts at: 4594 4594 Size: 5695 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5695 PfoI T'CCnGG_A Cuts at: 2202 2202 Size: 5695 PmeI GTTT'AAAC Cuts at: 2999 2999 Size: 5695 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3764 3796 5277 5309 3764 Size: 32 1481 32 4150 Fragments arranged by size: 4150 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2493 2493 Size: 5695 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5695 PsiI TTA'TAA Cuts at: 3265 3265 Size: 5695 PstI C_TGCA'G Cuts at: 830 3047 830 Size: 2217 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5695 SalI G'TCGA_C Cuts at: 1936 3037 1936 Size: 1101 4594 SbfI CC_TGCA'GG Cuts at: 3047 3047 Size: 5695 ScaI AGT'ACT Cuts at: 3943 5655 3943 Size: 1712 3983 SfcI C'TryA_G Cuts at: 826 1045 3043 4178 4859 5050 826 Size: 219 1998 1135 681 191 1471 Fragments arranged by size: 1998 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5695 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5695 SmaI CCC'GGG Cuts at: 1872 3022 1872 Size: 1150 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2289 2756 2926 3799 4700 4962 Size: 197 926 346 467 170 873 901 262 Cuts at: 4962 820 Size: 1553 Fragments arranged by size: 1553 926 901 873 467 346 262 197 170 SnaBI TAC'GTA Cuts at: 493 3486 493 Size: 2993 2702 SpeI A'CTAG_T Cuts at: 152 2512 2962 152 Size: 2360 450 2885 Fragments arranged by size: 2885 2360 450 SphI G_CATG'C Cuts at: 1132 3053 1132 Size: 1921 3774 SspI AAT'ATT Cuts at: 5 52 2713 2820 3619 5 Size: 47 2661 107 799 2081 Fragments arranged by size: 2661 2081 799 107 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5695 StyI C'CwwG_G Cuts at: 513 1065 3134 513 Size: 552 2069 3074 Fragments arranged by size: 3074 2069 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2328 2364 3722 3739 3892 4077 4522 Size: 1255 748 36 1358 17 153 185 445 Cuts at: 4522 325 Size: 1498 Fragments arranged by size: 1498 1358 1255 748 445 185 153 36 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2378 2442 3941 Size: 274 80 33 51 1443 401 64 1499 Cuts at: 3941 5653 96 Size: 1712 138 Fragments arranged by size: 1712 1499 1443 401 274 138 80 64 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5655 5687 5655 Size: 32 5663 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5695 XbaI T'CTAG_A Cuts at: 3031 3031 Size: 5695 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2653 2738 2653 Size: 85 5610 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5695 XmaI C'CCGG_G Cuts at: 1870 3020 1870 Size: 1150 4545 XmnI GAAnn'nnTTC Cuts at: 3824 3824 Size: 5695 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3503 276 Size: 53 83 186 936 1969 2468 Fragments arranged by size: 2468 1969 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI EcoRV FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI