FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5178, 153 aa 1>>>pF1KE5178 153 - 153 aa - 153 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1372+/-0.00028; mu= 13.0705+/- 0.018 mean_var=60.5020+/-12.109, 0's: 0 Z-trim(119.0): 30 B-trim: 1259 in 1/55 Lambda= 0.164888 statistics sampled from 32493 (32524) to 32493 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.381), width: 16 Scan time: 5.130 The best scores are: opt bits E(85289) NP_066957 (OMIM: 600789) 39S ribosomal protein L23 ( 153) 1042 255.4 2.7e-68 XP_011518578 (OMIM: 600789) PREDICTED: 39S ribosom ( 191) 675 168.1 6.2e-42 XP_011518577 (OMIM: 600789) PREDICTED: 39S ribosom ( 234) 675 168.1 7.4e-42 XP_011518575 (OMIM: 600789) PREDICTED: 39S ribosom ( 241) 675 168.2 7.6e-42 XP_006718334 (OMIM: 600789) PREDICTED: 39S ribosom ( 123) 663 165.2 3.1e-41 >>NP_066957 (OMIM: 600789) 39S ribosomal protein L23, mi (153 aa) initn: 1042 init1: 1042 opt: 1042 Z-score: 1347.1 bits: 255.4 E(85289): 2.7e-68 Smith-Waterman score: 1042; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153) 10 20 30 40 50 60 pF1KE5 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG 70 80 90 100 110 120 130 140 150 pF1KE5 SAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL ::::::::::::::::::::::::::::::::: NP_066 SAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL 130 140 150 >>XP_011518578 (OMIM: 600789) PREDICTED: 39S ribosomal p (191 aa) initn: 662 init1: 662 opt: 675 Z-score: 873.8 bits: 168.1 E(85289): 6.2e-42 Smith-Waterman score: 680; 73.3% identity (80.7% similar) in 150 aa overlap (1-150:1-137) 10 20 30 40 50 60 pF1KE5 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG ::::::::::::::::::::::::::::::::::::::: :. : :... .: XP_011 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQL--------PSQTPSKEQNGQG 70 80 90 100 110 130 140 150 pF1KE5 SAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL :. . : . . . ::: :.: XP_011 STLC-FRSSCSKGWSTWGTRDPR----PAWSPVGGRIPRKAGSGGPANRIAQDGRLLLKN 120 130 140 150 160 >>XP_011518577 (OMIM: 600789) PREDICTED: 39S ribosomal p (234 aa) initn: 662 init1: 662 opt: 675 Z-score: 872.5 bits: 168.1 E(85289): 7.4e-42 Smith-Waterman score: 680; 73.3% identity (80.7% similar) in 150 aa overlap (1-150:1-137) 10 20 30 40 50 60 pF1KE5 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG ::::::::::::::::::::::::::::::::::::::: :. : :... .: XP_011 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQL--------PSQTPSKEQNGQG 70 80 90 100 110 130 140 150 pF1KE5 SAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL :. . : . . . ::: :.: XP_011 STLC-FRSSCSKGWSTWGTRDPR----PAWSPVGGRIPRKAGSGGPANRIAQDGRLLLNS 120 130 140 150 160 >>XP_011518575 (OMIM: 600789) PREDICTED: 39S ribosomal p (241 aa) initn: 662 init1: 662 opt: 675 Z-score: 872.3 bits: 168.2 E(85289): 7.6e-42 Smith-Waterman score: 680; 73.3% identity (80.7% similar) in 150 aa overlap (1-150:1-137) 10 20 30 40 50 60 pF1KE5 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG ::::::::::::::::::::::::::::::::::::::: :. : :... .: XP_011 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQL--------PSQTPSKEQNGQG 70 80 90 100 110 130 140 150 pF1KE5 SAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL :. . : . . . ::: :.: XP_011 STLC-FRSSCSKGWSTWGTRDPR----PAWSPVGGRIPRKAGSGGPANRIAQDGRLLLNS 120 130 140 150 160 >>XP_006718334 (OMIM: 600789) PREDICTED: 39S ribosomal p (123 aa) initn: 663 init1: 663 opt: 663 Z-score: 861.3 bits: 165.2 E(85289): 3.1e-41 Smith-Waterman score: 663; 94.3% identity (97.1% similar) in 105 aa overlap (1-105:1-105) 10 20 30 40 50 60 pF1KE5 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MARNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEG :::::::::::::::::::::::::::::::::::::::. . . XP_006 YNVPVAAVRTRVQHGSNKRRDHRNVRIKKPDYKVAYVQLVPKEQYPLLLVNPSHMLWPGL 70 80 90 100 110 120 130 140 150 pF1KE5 SAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL XP_006 GLG 153 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:19:31 2016 done: Mon Nov 7 22:19:32 2016 Total Scan time: 5.130 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]