FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8930, 281 aa
  1>>>pF1KB8930 281 - 281 aa - 281 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9778+/-0.000686; mu= 10.8984+/- 0.042
 mean_var=159.6020+/-32.888, 0's: 0 Z-trim(116.3): 170  B-trim: 919 in 1/51
 Lambda= 0.101521
 statistics sampled from 16739 (16927) to 16739 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.52), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS31270.1 LBX1 gene_id:10660|Hs108|chr10         ( 281) 1859 283.0 1.7e-76
CCDS62938.1 LBX2 gene_id:85474|Hs108|chr2          ( 198)  515 86.0 2.4e-17
CCDS33228.1 LBX2 gene_id:85474|Hs108|chr2          ( 194)  381 66.3 1.9e-11


>>CCDS31270.1 LBX1 gene_id:10660|Hs108|chr10              (281 aa)
 initn: 1859 init1: 1859 opt: 1859  Z-score: 1486.8  bits: 283.0 E(32554): 1.7e-76
Smith-Waterman score: 1859; 100.0% identity (100.0% similar) in 281 aa overlap (1-281:1-281)

               10        20        30        40        50        60
pF1KB8 MTSKEDGKAAPGEERRRSPLDHLPPPANSNKPLTPFSIEDILNKPSVRRSYSLCGAAHLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MTSKEDGKAAPGEERRRSPLDHLPPPANSNKPLTPFSIEDILNKPSVRRSYSLCGAAHLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AAADKHAQGGLPLAGRALLSQTSPLCALEELASKTFKGLEVSVLQAAEGRDGMTIFGQRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AAADKHAQGGLPLAGRALLSQTSPLCALEELASKTFKGLEVSVLQAAEGRDGMTIFGQRQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 TPKKRRKSRTAFTNHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TPKKRRKSRTAFTNHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 KRDLEEMKADVESAKKLGPSGQMDIVALAELEQNSEATAGGGGGCGRAKSRPGSPVLPPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KRDLEEMKADVESAKKLGPSGQMDIVALAELEQNSEATAGGGGGCGRAKSRPGSPVLPPG
              190       200       210       220       230       240

              250       260       270       280 
pF1KB8 APKAPGAGALQLSPASPLTDQPASSQDCSEDEEDEEIDVDD
       :::::::::::::::::::::::::::::::::::::::::
CCDS31 APKAPGAGALQLSPASPLTDQPASSQDCSEDEEDEEIDVDD
              250       260       270       280 

>>CCDS62938.1 LBX2 gene_id:85474|Hs108|chr2               (198 aa)
 initn: 591 init1: 513 opt: 515  Z-score: 424.9  bits: 86.0 E(32554): 2.4e-17
Smith-Waterman score: 523; 46.7% identity (61.6% similar) in 229 aa overlap (59-281:13-198)

       30        40        50        60        70         80       
pF1KB8 SNKPLTPFSIEDILNKPSVRRSYSLCGAAHLLAAADKHAQGGLPLAGRA-LLSQ-----T
                                     ::. ::  :   .: :  :  : .     :
CCDS62                   MNSGREPRTPRTLLSIADILAPRMVPRAPSAPQLPESGPGPT
                                 10        20        30        40  

             90       100       110       120       130       140  
pF1KB8 SPLCALEELASKTFKGLEVSVLQAAEGRDGMTIFGQRQTPKKRRKSRTAFTNHQIYELEK
       :::::::::.::::.::.. .:: .::: :   .:     .:::::::::: .:. :::.
CCDS62 SPLCALEELTSKTFRGLDARALQPSEGRAGPDALGPGPFGRKRRKSRTAFTAQQVLELER
             50        60        70        80        90       100  

            150       160       170       180       190       200  
pF1KB8 RFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRDLEEMKADVESAKKLGPSGQ
       ::..::::.:..:: .: .:::.::::.:::::::::::::.:::.::: : . :.:   
CCDS62 RFVFQKYLAPSERDGLATRLGLANAQVVTWFQNRRAKLKRDVEEMRADVASLRALSP---
            110       120       130       140       150            

            210       220       230       240       250       260  
pF1KB8 MDIVALAELEQNSEATAGGGGGCGRAKSRPGSPVLPPGAPKAPGAGALQLSPASPLTDQP
        ...                  :. :        :: :::  ::   : :.::.:     
CCDS62 -EVL------------------CSLA--------LPEGAPD-PG---LCLGPAGP-----
      160                                 170           180        

            270       280 
pF1KB8 ASSQDCSEDEEDEEIDVDD
           :      ::::.:::
CCDS62 ----DSRPHLSDEEIQVDD
               190        

>>CCDS33228.1 LBX2 gene_id:85474|Hs108|chr2               (194 aa)
 initn: 426 init1: 370 opt: 381  Z-score: 319.0  bits: 66.3 E(32554): 1.9e-11
Smith-Waterman score: 389; 45.9% identity (61.6% similar) in 172 aa overlap (110-281:66-194)

      80        90       100       110       120       130         
pF1KB8 SQTSPLCALEELASKTFKGLEVSVLQAAEGRDGMTIFGQRQTPKKRRKSRTAFTNHQIYE
                                     : :   .:     .:::::::::: .:. :
CCDS33 RPGGWRWARRDLCKTASRAENNSQACRPQRRAGPDALGPGPFGRKRRKSRTAFTAQQVLE
          40        50        60        70        80        90     

     140       150       160       170       180       190         
pF1KB8 LEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRDLEEMKADVESAKKLGP
       ::.::..::::.:..:: .: .:::.::::.:::::::::::::.:::.::: : . :.:
CCDS33 LERRFVFQKYLAPSERDGLATRLGLANAQVVTWFQNRRAKLKRDVEEMRADVASLRALSP
         100       110       120       130       140       150     

     200       210       220       230       240       250         
pF1KB8 SGQMDIVALAELEQNSEATAGGGGGCGRAKSRPGSPVLPPGAPKAPGAGALQLSPASPLT
           ...                  :. :        :: :::  ::   : :.::.:  
CCDS33 ----EVL------------------CSLA--------LPEGAPD-PG---LCLGPAGP-D
                               160                170           180

     260       270       280 
pF1KB8 DQPASSQDCSEDEEDEEIDVDD
       ..:  :        ::::.:::
CCDS33 SRPHLS--------DEEIQVDD
                      190    




281 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:21:00 2016 done: Tue Nov  8 04:21:01 2016
 Total Scan time:  2.830 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]