FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2540, 974 aa 1>>>pF1KE2540 974 - 974 aa - 974 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.1235+/-0.00104; mu= 3.1082+/- 0.062 mean_var=169.4610+/-34.828, 0's: 0 Z-trim(109.7): 35 B-trim: 56 in 1/52 Lambda= 0.098523 statistics sampled from 11021 (11046) to 11021 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.339), width: 16 Scan time: 4.410 The best scores are: opt bits E(32554) CCDS31206.1 BICC1 gene_id:80114|Hs108|chr10 ( 974) 6352 915.8 0 >>CCDS31206.1 BICC1 gene_id:80114|Hs108|chr10 (974 aa) initn: 6352 init1: 6352 opt: 6352 Z-score: 4887.3 bits: 915.8 E(32554): 0 Smith-Waterman score: 6352; 100.0% identity (100.0% similar) in 974 aa overlap (1-974:1-974) 10 20 30 40 50 60 pF1KE2 MAAQGEPGYLAAQSDPGSNSERSTDSPVPGSEDDLVAGATLHSPEWSEERFRVDRKKLEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MAAQGEPGYLAAQSDPGSNSERSTDSPVPGSEDDLVAGATLHSPEWSEERFRVDRKKLEA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 MLQAAAEGKGRSGEDFFQKIMEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKEDVKEAKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MLQAAAEGKGRSGEDFFQKIMEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKEDVKEAKE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 MIMSVLDTKSNRVTLKMDVSHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSNRNNQAEKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MIMSVLDTKSNRVTLKMDVSHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSNRNNQAEKS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 NQVSIAGQPAGVESARVRIRELLPLVLMFELPIAGILQPVPDPNSPSIQHISQTYNISVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 NQVSIAGQPAGVESARVRIRELLPLVLMFELPIAGILQPVPDPNSPSIQHISQTYNISVS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 FKQRSRMYGATVIVRGSQNNTSAVKEGTAMLLEHLAGSLASAIPVSTQLDIAAQHHLFMM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 FKQRSRMYGATVIVRGSQNNTSAVKEGTAMLLEHLAGSLASAIPVSTQLDIAAQHHLFMM 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 GRNGSNIKHIMQRTGAQIHFPDPSNPQKKSTVYLQGTIESVCLARQYLMGCLPLVLMFDM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 GRNGSNIKHIMQRTGAQIHFPDPSNPQKKSTVYLQGTIESVCLARQYLMGCLPLVLMFDM 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 KEEIEVDPQFIAQLMEQLDVFISIKPKPKQPSKSVIVKSVERNALNMYEARKCLLGLESS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 KEEIEVDPQFIAQLMEQLDVFISIKPKPKQPSKSVIVKSVERNALNMYEARKCLLGLESS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 GVTIATSPSPASCPAGLACPSLDILASAGLGLTGLGLLGPTTLSLNTSTTPNSLLNALNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 GVTIATSPSPASCPAGLACPSLDILASAGLGLTGLGLLGPTTLSLNTSTTPNSLLNALNS 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 SVSPLQSPSSGTPSPTLWAPPLANTSSATGFSAIPHLMIPSTAQATLTNILLSGVPTYGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 SVSPLQSPSSGTPSPTLWAPPLANTSSATGFSAIPHLMIPSTAQATLTNILLSGVPTYGH 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE2 TAPSPPPGLTPVDVHINSMQTEGKKISAALNGHAQSPDIKYGAISTSSLGEKVLSANHGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 TAPSPPPGLTPVDVHINSMQTEGKKISAALNGHAQSPDIKYGAISTSSLGEKVLSANHGD 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE2 PSIQTSGSEQTSPKSSPTEGCNDAFVEVGMPRSPSHSGNAGDLKQMMCPSKVSCAKRQTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 PSIQTSGSEQTSPKSSPTEGCNDAFVEVGMPRSPSHSGNAGDLKQMMCPSKVSCAKRQTV 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE2 ELLQGTKNSHLHSTDRLLSDPELSATESPLADKKAPGSERAAERAAAAQQNSERAHLAPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 ELLQGTKNSHLHSTDRLLSDPELSATESPLADKKAPGSERAAERAAAAQQNSERAHLAPR 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE2 SSYVNMQAFDYEQKKLLATKAMLKKPVVTEVRTPTNTWSGLGFSKSMPAETIKELRRANH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 SSYVNMQAFDYEQKKLLATKAMLKKPVVTEVRTPTNTWSGLGFSKSMPAETIKELRRANH 730 740 750 760 770 780 790 800 810 820 830 840 pF1KE2 VSYKPTMTTTYEGSSMSLSRSNSREHLGGGSESDNWRDRNGIGPGSHSEFAASIGSPKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 VSYKPTMTTTYEGSSMSLSRSNSREHLGGGSESDNWRDRNGIGPGSHSEFAASIGSPKRK 790 800 810 820 830 840 850 860 870 880 890 900 pF1KE2 QNKSTEHYLSSSNYMDCISSLTGSNGCNLNSSFKGSDLPELFSKLGLGKYTDVFQQQEID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 QNKSTEHYLSSSNYMDCISSLTGSNGCNLNSSFKGSDLPELFSKLGLGKYTDVFQQQEID 850 860 870 880 890 900 910 920 930 940 950 960 pF1KE2 LQTFLTLTDQDLKELGITTFGARRKMLLAISELNKNRRKLFESPNARTSFLEGGASGRLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 LQTFLTLTDQDLKELGITTFGARRKMLLAISELNKNRRKLFESPNARTSFLEGGASGRLP 910 920 930 940 950 960 970 pF1KE2 RQYHSDIASVSGRW :::::::::::::: CCDS31 RQYHSDIASVSGRW 970 974 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 03:46:03 2016 done: Tue Nov 8 03:46:04 2016 Total Scan time: 4.410 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]