FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2559, 147 aa 1>>>pF1KE2559 147 - 147 aa - 147 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1663+/-0.000285; mu= 12.5384+/- 0.018 mean_var=65.3495+/-13.212, 0's: 0 Z-trim(118.8): 12 B-trim: 1231 in 1/54 Lambda= 0.158655 statistics sampled from 32111 (32128) to 32111 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.377), width: 16 Scan time: 5.420 The best scores are: opt bits E(85289) XP_005273196 (OMIM: 609605) PREDICTED: microtubule ( 147) 969 229.7 1.3e-60 NP_001004343 (OMIM: 609605) microtubule-associated ( 147) 969 229.7 1.3e-60 NP_115903 (OMIM: 601242) microtubule-associated pr ( 121) 466 114.5 5.2e-26 XP_011527387 (OMIM: 601242) PREDICTED: microtubule ( 182) 466 114.6 7.3e-26 XP_011527385 (OMIM: 601242) PREDICTED: microtubule ( 223) 466 114.6 8.6e-26 XP_011527386 (OMIM: 601242) PREDICTED: microtubule ( 223) 466 114.6 8.6e-26 NP_073729 (OMIM: 609604) microtubule-associated pr ( 125) 443 109.2 2.1e-24 NP_852610 (OMIM: 601242) microtubule-associated pr ( 125) 399 99.2 2.2e-21 NP_113600 (OMIM: 607420) gamma-aminobutyric acid r ( 117) 309 78.5 3.3e-15 NP_009216 (OMIM: 607452) gamma-aminobutyric acid r ( 117) 306 77.9 5.4e-15 NP_009209 (OMIM: 605125) gamma-aminobutyric acid r ( 117) 296 75.6 2.6e-14 XP_005253401 (OMIM: 607420) PREDICTED: gamma-amino ( 146) 250 65.1 4.7e-11 >>XP_005273196 (OMIM: 609605) PREDICTED: microtubule-ass (147 aa) initn: 969 init1: 969 opt: 969 Z-score: 1208.9 bits: 229.7 E(85289): 1.3e-60 Smith-Waterman score: 969; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147) 10 20 30 40 50 60 pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA 70 80 90 100 110 120 130 140 pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL ::::::::::::::::::::::::::: XP_005 SQETFGCLESAAPRDGSSLEDRPCNPL 130 140 >>NP_001004343 (OMIM: 609605) microtubule-associated pro (147 aa) initn: 969 init1: 969 opt: 969 Z-score: 1208.9 bits: 229.7 E(85289): 1.3e-60 Smith-Waterman score: 969; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147) 10 20 30 40 50 60 pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA 70 80 90 100 110 120 130 140 pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL ::::::::::::::::::::::::::: NP_001 SQETFGCLESAAPRDGSSLEDRPCNPL 130 140 >>NP_115903 (OMIM: 601242) microtubule-associated protei (121 aa) initn: 466 init1: 466 opt: 466 Z-score: 587.9 bits: 114.5 E(85289): 5.2e-26 Smith-Waterman score: 466; 59.2% identity (85.0% similar) in 120 aa overlap (7-126:1-120) 10 20 30 40 50 60 pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV .:: ::::::.:.: : .:: :: . :.::::..::: : :: :::::::: NP_115 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLV 10 20 30 40 50 70 80 90 100 110 120 pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA :....:.....::: :. : :.::.::::..:.::.:. .:.::.. ::::::.::.:: NP_115 PDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYA 60 70 80 90 100 110 130 140 pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL :::::: NP_115 SQETFGF 120 >>XP_011527387 (OMIM: 601242) PREDICTED: microtubule-ass (182 aa) initn: 466 init1: 466 opt: 466 Z-score: 585.3 bits: 114.6 E(85289): 7.3e-26 Smith-Waterman score: 466; 59.2% identity (85.0% similar) in 120 aa overlap (7-126:62-181) 10 20 30 pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNK .:: ::::::.:.: : .:: :: . :.: XP_011 REARSPRSPQTADTSPRPRAPACAPSRARAMPSDRPFKQRRSFADRCKEVQQIRDQHPSK 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE2 IPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVS :::..::: : :: :::::::::....:.....::: :. : :.::.::::..:.:: XP_011 IPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVS 100 110 120 130 140 150 100 110 120 130 140 pF1KE2 MSATMAEIYRDYKDEDGFVYMTYASQETFGCLESAAPRDGSSLEDRPCNPL .:. .:.::.. ::::::.::.:::::::: XP_011 VSTPIADIYEQEKDEDGFLYMVYASQETFGF 160 170 180 >>XP_011527385 (OMIM: 601242) PREDICTED: microtubule-ass (223 aa) initn: 466 init1: 466 opt: 466 Z-score: 584.0 bits: 114.6 E(85289): 8.6e-26 Smith-Waterman score: 466; 59.2% identity (85.0% similar) in 120 aa overlap (7-126:103-222) 10 20 30 pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNK .:: ::::::.:.: : .:: :: . :.: XP_011 REARSPRSPQTADTSPRPRAPACAPSRARAMPSDRPFKQRRSFADRCKEVQQIRDQHPSK 80 90 100 110 120 130 40 50 60 70 80 90 pF1KE2 IPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVS :::..::: : :: :::::::::....:.....::: :. : :.::.::::..:.:: XP_011 IPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVS 140 150 160 170 180 190 100 110 120 130 140 pF1KE2 MSATMAEIYRDYKDEDGFVYMTYASQETFGCLESAAPRDGSSLEDRPCNPL .:. .:.::.. ::::::.::.:::::::: XP_011 VSTPIADIYEQEKDEDGFLYMVYASQETFGF 200 210 220 >>XP_011527386 (OMIM: 601242) PREDICTED: microtubule-ass (223 aa) initn: 466 init1: 466 opt: 466 Z-score: 584.0 bits: 114.6 E(85289): 8.6e-26 Smith-Waterman score: 466; 59.2% identity (85.0% similar) in 120 aa overlap (7-126:103-222) 10 20 30 pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNK .:: ::::::.:.: : .:: :: . :.: XP_011 REARSPRSPQTADTSPRPRAPACAPSRARAMPSDRPFKQRRSFADRCKEVQQIRDQHPSK 80 90 100 110 120 130 40 50 60 70 80 90 pF1KE2 IPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVS :::..::: : :: :::::::::....:.....::: :. : :.::.::::..:.:: XP_011 IPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVS 140 150 160 170 180 190 100 110 120 130 140 pF1KE2 MSATMAEIYRDYKDEDGFVYMTYASQETFGCLESAAPRDGSSLEDRPCNPL .:. .:.::.. ::::::.::.:::::::: XP_011 VSTPIADIYEQEKDEDGFLYMVYASQETFGF 200 210 220 >>NP_073729 (OMIM: 609604) microtubule-associated protei (125 aa) initn: 443 init1: 443 opt: 443 Z-score: 559.2 bits: 109.2 E(85289): 2.1e-24 Smith-Waterman score: 443; 55.0% identity (84.2% similar) in 120 aa overlap (7-126:1-120) 10 20 30 40 50 60 pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV .:: . ::::... : :.: :: . :.::::..::: : :: :::::::: NP_073 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLV 10 20 30 40 50 70 80 90 100 110 120 pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA :....:.....::: :. : :..::.::::..:.::.:. ..:.:.. ::::::.::.:: NP_073 PDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 60 70 80 90 100 110 130 140 pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL :::::: NP_073 SQETFGMKLSV 120 >>NP_852610 (OMIM: 601242) microtubule-associated protei (125 aa) initn: 399 init1: 399 opt: 399 Z-score: 504.8 bits: 99.2 E(85289): 2.2e-21 Smith-Waterman score: 399; 57.9% identity (84.1% similar) in 107 aa overlap (20-126:18-124) 10 20 30 40 50 60 pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV : : .:: :: . :.::::..::: : :: :::::::: NP_852 MKMRFFSSPCGKAAVDPADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLV 10 20 30 40 50 70 80 90 100 110 120 pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA :....:.....::: :. : :.::.::::..:.::.:. .:.::.. ::::::.::.:: NP_852 PDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYA 60 70 80 90 100 110 130 140 pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL :::::: NP_852 SQETFGF 120 >>NP_113600 (OMIM: 607420) gamma-aminobutyric acid recep (117 aa) initn: 308 init1: 142 opt: 309 Z-score: 393.9 bits: 78.5 E(85289): 3.3e-15 Smith-Waterman score: 309; 39.5% identity (76.3% similar) in 114 aa overlap (13-126:5-116) 10 20 30 40 50 60 pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV .:. . . :..: :: :.:...::.::. :. .: ::: :.:: NP_113 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKAR-VPDLDKRKYLV 10 20 30 40 50 70 80 90 100 110 120 pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA :..::. :: .::.:. :: .:....::: .. ::::...:.: ..:: :.:..:. NP_113 PSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-TIPPTSATMGQLYEDNHEEDYFLYVAYS 60 70 80 90 100 110 130 140 pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL .. ..: NP_113 DESVYGK >>NP_009216 (OMIM: 607452) gamma-aminobutyric acid recep (117 aa) initn: 303 init1: 115 opt: 306 Z-score: 390.2 bits: 77.9 E(85289): 5.4e-15 Smith-Waterman score: 306; 43.0% identity (78.1% similar) in 114 aa overlap (13-126:5-116) 10 20 30 40 50 60 pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV ::. .:: : : : ::::.:...::.::. .. .:: :.:: NP_009 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVD-IDKRKYLV 10 20 30 40 50 70 80 90 100 110 120 pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA :...:..::. :::.:. : . .:..:.:. :.. . : ::...:. ::::::.:..:. NP_009 PSDITVAQFMWIIRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYS 60 70 80 90 100 110 130 140 pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL ...::: NP_009 GENTFGF 147 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 21:30:55 2016 done: Fri Nov 4 21:30:56 2016 Total Scan time: 5.420 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]